Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq249 95.1 9e-14 >seq249 Length=106399 Score = 95.1 bits (104), Expect = 9e-14 Identities = 296/456 (65%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 || || || || ||||| || || | || || || || |||| | |||||| || | | Sbjct 22591 TCGATGCCCTCAAACAACGAGTCGATCTCGATGGTGGTCTGAGCTGCAGAAGACAGGGTA 22650 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT-TCAA 282138 || || ||||| || || || || | || | || | || || | | || | | Sbjct 22651 CGCTTCGCACGCTCGCAAGCAGTTCGCAGACGACGAAGAGCGCGAGC-GTTGGAGGTGAG 22709 Query 282139 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAA 282198 ||| | || | ||||||||||| |||| ||| | | || | || || ||||| Sbjct 22710 GTCTTTCTTGTTCTTTCTCTTGAATTCTTGGACAAAGTGGTTGACCAACCGGTTGTCAAA 22769 Query 282199 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 282258 ||||| || || | | ||| | || | || || | || | ||| | || || || Sbjct 22770 GTCTTCGCCACCAAGGTGAGTGTCACCAGCGGTGGCCTTGACCTCGAAGATACCCTCCTC 22829 Query 282259 AAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 282318 | || ||| || | || || || ||||| |||| ||| ||||| || || ||| | Sbjct 22830 GATAGTCAAGAGGGACACGTCGAATGTACCACCTCCCAAATCGAAAATCAGAACGTTCTT 22889 Query 282319 TTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAAT 282378 || || || || || || || || |||| ||||| || || || || || || Sbjct 22890 CTCGCCCTCAGACTTCTTGTCGAGGCCGTATGCAATGGCAGCTGCGGTGGGCTCGTTGAT 22949 Query 282379 AATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGA 282438 || | | || || ||||||| ||| | || || || || || || || | |||||| Sbjct 22950 GATGCGGAGCACGTTGAGACCAGAAATGATACCAGCGTCCTTGGTAGCCTGACGTTGTGA 23009 Query 282439 ATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 |||||||| |||||||| ||||| | ||||| || Sbjct 23010 GTCGTTAAAGTATGCAGGTACAGTCACGACGGCGTC 23045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740606588549610