Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq233 95.1 1e-14 >seq233 Length=223772 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 137221 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 137280 || || || |||||||| ||| | |||| ||||||||||||||| |||||| | Sbjct 211283 TCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCTTCGAGTTGTTTGCCAGCAAAA 211342 Query 137281 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 137340 || || ||||||||||| ||||| |||||||||||||| || ||| || | | Sbjct 211343 ATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTTGCCTTGACGTTG 211402 Query 137341 TCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 137400 || | || || | ||||| || | ||| | |||||| ||||| | ||||| || Sbjct 211403 TCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTCTTTCCGGTGAGGGTTTTGACA 211462 Query 137401 AATATTTGCATA 137412 || || |||||| Sbjct 211463 AAGATCTGCATA 211474 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || || || | ||| | || ||||||| ||| ||| || || |||||||| || Sbjct 211016 TGACCACCGCGCAGACGAAGCACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCA 211075 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 | |||| |||||||||||| || || ||| |||| || | |||||| ||||| Sbjct 211076 GAAAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGT 211135 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || ||||| |||||||| ||| ||| || | | || | || || || || Sbjct 211136 GGGATGCCCTCTTTGTCTTGAATCTTTGCCTTGACATTGTCAATGGTATCGCTGCTCTCC 211195 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || | ||| | |||||| || || | || || ||||| ||||||||| Sbjct 211196 ACCTCCAAAGTAATCGTCTTTCCAGTGAGAGTCTTCACGAAAATTTGCATA 211246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488541038202000