Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq233 150 4e-31 seq221 140 6e-28 seq232 84.2 4e-11 >seq233 Length=223772 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || ||| || || || || |||||| ||| ||||| || || || ||||| Sbjct 211018 ACCACCGCGCAGACGAAGCACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGA 211077 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||||||||| ||||| || || |||||||| || ||||| || || || || Sbjct 211078 AAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGG 211137 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || || || |||||||||||||| || ||||| ||||| ||||| | || || Sbjct 211138 GATGCCCTCTTTGTCTTGAATCTTTGCCTTGACATTGTCAATGGTATCGCTGCTCTCCAC 211197 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||||||| || || | ||||| || || || ||||| Sbjct 211198 CTCCAAAGTAATCGTCTTTCCAGTGAGAGTCTTCACGAAAATTTGCAT 211245 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 ||||| || || ||||| || |||||||| || | |||||| || || || || || ||| Sbjct 211618 CCGTCCTCGAGCTGTTTACCGGCAAAGATGAGGCGTTGTTGGTCAGGTGGGATGCCCTCC 211677 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||||||||| ||||| || || || || || ||| || || ||||| | || Sbjct 211678 TTGTCTTGAATCTTGGCTTTGACGTTGTCGATGGTGTCAGAAGACTCGACTTCGAGGGTG 211737 Query 82773 ATCGTCTTGCCTGTC 82787 || |||||||| ||| Sbjct 211738 ATGGTCTTGCCGGTC 211752 >seq221 Length=819827 Score = 140 bits (154), Expect = 6e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | |||||||| || | ||| ||||| ||||| ||||| || || || || || Sbjct 382197 ACCGCCACGCAAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGA 382138 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | || || || || || || || || |||||||| | |||||||||||| ||||| Sbjct 382137 CAGGGTCCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGG 382078 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTA 82761 || || ||||| || || ||||| || || ||||| || || || || || | || | Sbjct 382077 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTC-CGAGCTCTCGA 382019 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 382018 CCTCCAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 >seq232 Length=169745 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || ||||| || || |||||||| || | ||||| || || || ||||| ||| Sbjct 24069 CCATCCTCCAGTTGCTTGCCTGCAAAGATCAGACGCTGTTGGTCGGGTGGAATTCCCTCC 24010 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||||||||| || || ||||| || || || || || || || || | || Sbjct 24009 TTGTCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTG 23950 Query 82773 ATCGTCTTGCCTGT 82786 ||||||||||| || Sbjct 23949 ATCGTCTTGCCCGT 23936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981821098864415