Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq318 372 3e-98 seq275 111 2e-19 seq233 102 8e-17 >seq318 Length=903324 Score = 372 bits (412), Expect = 3e-98 Identities = 1197/1829 (65%), Gaps = 69/1829 (4%) Strand=Plus/Minus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 ||||||||||||||| ||||||||||||| ||| | ||| |||| ||||| ||| Sbjct 25555 GTGCGCAGATAGTACGTGCCCGTCTTGAGTCCCTTCTTCCAGCCGTAAAAGTGCATCGAG 25496 Query 148011 GACATGAGCGTGT----ACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTC 148066 | ||||| ||| ||||||| ||| | | || || || || ||| Sbjct 25495 G---TGAGC-TGTCCAAACGTCGGCGATTGCAGATGAATGTTCAAGCTTTGACTTTGGCA 25440 Query 148067 AATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCG-CTTTATCTTCATCTCCCAGG 148125 ||||| || ||||| || || ||||| || |||| ||| |||| | |||||||| Sbjct 25439 GATGAATGCTCCACGATCGGCAGCCATCTCGATGA-TCGACTTTTGCGAAATCTCCCACA 25381 Query 148126 CCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGC 148185 |||||||||| ||| |||||| ||||| |||||| | | || | ||||||| Sbjct 25380 CCGTCTTGTAGAGCGCCTTGATCCTGTCGGGTATGCCGGGAACGTTTTGGATGGAGCCGC 25321 Query 148186 GGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCAT 148245 || |||| || | || ||| | || | | || |||||| ||| || Sbjct 25320 CATGGGCAATGATGCGGTTTTTCATGCCCTCATTCCACAGACCCTGCTCGACCAGCTCGC 25261 Query 148246 CGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGT 148305 | || || | || || || || ||||| ||||| ||||| || ||| || | || Sbjct 25260 GCAGCAACCACGGGTTGACAACTTGGAACTCTCCGGCCAGCACACGACGCGTGTAGATGT 25201 Query 148306 TGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGG 148365 || || | || ||||| | |||||| ||| | |||||| | ||| | || || | Sbjct 25200 TGGATGTGTAGGGCTCAAAGCATTCGTTGAAGCCGAGAATCTGAGAGGTGGAGGCGGTAG 25141 Query 148366 GCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAG 148425 ||||| || | ||||||||||||||| | |||| | | || |||| |||||| | Sbjct 25140 GCATGGGTGCGAGCAGCAGCGAGTTGCGAAGACCGTGCTCGGAAATCTTGCTCTTCAGCG 25081 Query 148426 CCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGC 148485 | ||| ||||| | || ||||| ||| |||||||||||||||||| || Sbjct 25080 TGGTCCAATCCCACAAGTCAGAAGGTGTGACGCCCCACATGTCGTACTGCAGCTCTCCCT 25021 Query 148486 GGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGT-GCGCCGCCGCCAGTTCGCA- 148543 | ||||| ||| | ||| | ||| || |||| ||| | || || ||||| Sbjct 25020 TGGAGGCGGGCGAGCCTTGGTAGGTCTGGTAGGGACCGTCGCGTTGG-GCAAGCTCGCAA 24962 Query 148544 GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA---GCGC 148600 | ||| || || ||| ||| ||| || |||||| ||||||| |||||||| |||| Sbjct 24961 GAGCGC-TCCAGTGCGGCGTGGTAGATGGTCTCGAAAATTTGCTTGTTGAGCTTGCGCGC 24903 Query 148601 CGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTAC 148660 | | | | || | | ||| | || || || || ||||| || || || || Sbjct 24902 TTCGGGCGAG---TCAAAGGCCATGCCGAGGATCATGAAAGCATCGGCCAGACCTTGCAC 24846 Query 148661 GCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTG 148720 || | ||| ||||| ||||| | |||||| | ||||| ||||| ||||||| Sbjct 24845 TCCGATGCCGATGGGACGGTGACGGAAGTTGGAACGACGCGCCTCCTCGACGGGATAGTA 24786 Query 148721 GTTGCGGTCGATGATCTTGTCAAGATTGCGCACC-ACCACCTTTGTAATTCTGCGCAGCA 148779 |||| ||||||||| || || |||| ||| | ||||||| | | | || Sbjct 24785 GTTGACGTCGATGATGCGGTTCAGGTTGC-CACAGATGACCTTTGCGACGGCGTGAAGTT 24727 Query 148780 ATTCAAAATCGTAC----TTGTC--ATCTACGATGCATCGGTT-CACGGCGATAGAGGCT 148832 | ||| | |||| | ||| | ||||| | || | || |||||| || || Sbjct 24726 TCTTAAAGTTGTACGACTTGGTCGAAGTGTCGATGAA-CGATGGCAGGGCGATGGATGCC 24668 Query 148833 AGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTG 148892 | ||||| ||||| ||| || || || |||||| | |||||||| |||||| || Sbjct 24667 AAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATGATCTCGGTGCACAGGTTA 24608 Query 148893 CTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTAC 148952 |||| ||||| ||||| |||||| || |||||||||| ||| ||| ||||||||| Sbjct 24607 CTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCCTTGTAC 24548 Query 148953 AGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGA---ACCGATGCAGGTCC 149009 ||||| | || |||||| || | |||| ||||| ||| ||| ||| | Sbjct 24547 AGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTACCA---CAGCTTT 24491 Query 149010 TGCGCGCGCACTTGCTG-----CTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCC 149064 ||||| |||| || || | |||||||||| ||||| |||||| Sbjct 24490 TGCGC-----CTTGATGGTGCGCTTGGCGCGACCCTCCGCTTCGTACTTTTCGTACAGCG 24436 Query 149065 GCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCG 149124 || ||| ||||||| ||| ||| | | || ||||||| || |||||||| | Sbjct 24435 CTTCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGC 24376 Query 149125 ACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACA 149184 |||| |||||| | | || |||||||| || || || || | ||| |||||||| | Sbjct 24375 TCCACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGA 24316 Query 149185 TGAGGTCGCGCGCCTTGCAGTCTTCGGCGC--CCATGTTGCG-GCGCAGGTTGAGCACGC 149241 || ||||| || | ||| |||| | || || | | |||||||| || | Sbjct 24315 ACAGCTCGCGTGC-TCGCA--CTTCCTCCTTTCCGTGATTCTTGCGCAGGTCCAGGAACT 24259 Query 149242 TGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC------CTTGCGCT 149295 ||| ||||| | |||||| ||||| ||| | || | ||||| |||| | Sbjct 24258 CGAAAATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTG---T 24202 Query 149296 TGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGC 149355 |||| || ||||| |||| ||| | ||||||| || ||||| | ||| || | |||| Sbjct 24201 TGCCACCTTGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGC 24142 Query 149356 CACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGT 149415 | || | ||| || || |||| || ||| | || | ||||| | | Sbjct 24141 CGTTGCTAAAGCCATTGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATGC 24082 Query 149416 TGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCGAGTAG 149474 | | ||| || || ||| | ||| || ||||| ||| ||| || |||| Sbjct 24081 TCAGGCCTATACCACCGGCAGTCTTGCTAATCATGGCGCACGTCTT-GAGAGTGTCGTAG 24023 Query 149475 ATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAA 149534 ||||| ||||||||||| ||||||| | || |||||||| | | ||| || | Sbjct 24022 ATGCCGTCGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGA 23963 Query 149535 CGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATC 149594 |||||||||| ||| | ||| ||| |||||| ||||| || || | | ||| | Sbjct 23962 GGCGTGCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGG 23903 Query 149595 TCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATC 149654 | ||||| ||| | |||| || | ||||||||| |||||||| | |||||||||||| Sbjct 23902 TTGTACGTCTCAATCACGGAATCGACGTCATCGCCGTGGATGCCAACGGCGACGCGCATA 23843 Query 149655 AGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTG---AGCAAGTAGCCGTTT 149711 | ||| ||||| || || || || || | |||| | || |||| ||| Sbjct 23842 ATCATGTGCTGAGGACGTTCGGCGAC---GCGTCCATTGATGCGAAGCAGGTATGATCGC 23786 Query 149712 TCTAGTGTCTTGTAGCCAAAGTACTTGTA 149740 || || |||||| |||||||||| || || Sbjct 23785 TCCAGCGTCTTGAAGCCAAAGTAGTTCTA 23757 >seq275 Length=588737 Score = 111 bits (122), Expect = 2e-19 Identities = 144/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCGAGCTGCTTGCCCGC 133525 ||| ||||| || ||||| ||| || || || | | ||||||||||||||||| || Sbjct 39388 CTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTG--CCA-TCCTCGAGCTGCTTGCCAGC 39332 Query 133526 GTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAG 133585 | | ||||| || || ||||| ||||| || || |||||||| |||||| ||| | Sbjct 39331 GAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTCAC 39272 Query 133586 CTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTT 133645 | || | |||||| | | ||| || || | ||||| ||| || || ||||| || || Sbjct 39271 ATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTT 39212 Query 133646 TACGAAAATCTGCATG 133661 ||||||||||||||| Sbjct 39211 GACGAAAATCTGCATG 39196 >seq233 Length=223772 Score = 102 bits (112), Expect = 8e-17 Identities = 322/485 (66%), Gaps = 18/485 (4%) Strand=Plus/Plus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| ||||| || || ||||| || || || ||||| ||| || | Sbjct 43219 CAGGCAGGCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCT 43278 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 ||| || ||||| | || || |||||| | || |||| ||||| || || || Sbjct 43279 CAGTCCCGGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAA 43338 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCG-CCGTCTTGC 120817 ||| | |||||| ||| ||||||||||| || | ||||| || | | |||| || Sbjct 43339 GAAGATGCCCTCGACGGCGGCAAAGGCGATCAGTCTCTCGGAGAAGGAAGATCGTC-TGT 43397 Query 120818 TGTCGATCCACTTCATGGCCCACTCGGCCTTT---TTGCGCACGCACGGCATCCGCTCGA 120874 | ||||||| | | ||||| || |||||| ||| |||| || ||| ||||| Sbjct 43398 CGGAGATCCACCTGAGTGCCCAGTCAGCCTTTTGCTTGACCACG---GGAATCGTCTCGA 43454 Query 120875 ACGCGTTCAGCAGCATGTCGCGCTCGCCCTCCTCCGC---AATCAGCTGATGGATGAGCA 120931 || | | || | || | || || || | ||| || || || | |||||||| Sbjct 43455 CGGCATCAAACAAGAACTCTCTCT-GCTCTGGTTCGCGGATATAAG-TG-TCGATGAGCA 43511 Query 120932 GATTGTACATTTCCGTGTGCACGCACTCGATCAGCACTTGCTGGTTGTAAAAGTA-CTGC 120990 || ||| | |||| ||| | | ||| |||| | ||| ||||||| | ||| Sbjct 43512 GAGAGTAAGTCTCCGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAAAAGCATCTG- 43570 Query 120991 GCCTCCAGCT-CGGGCACCGCCCGCTGCATGTACTCGATAAGGTTAATATTCACGATACT 121049 |||| | ||| | ||||| | || | ||| | | ||| ||||||||| | Sbjct 43571 GCCT-CTGCTGCTTGCACCTCTTGCGAGAATCGCTCCACCAAGTTCTCATTCACGATGCC 43629 Query 121050 GTCGGCGGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAG 121109 ||| | || || ||||| || |||||||| || |||||| | ||| | ||| |||| Sbjct 43630 GTCCGAAGCTGCAAAGAAGGCGAGCACGTGAGAGACAAAGTGCCTCTCATTGTCGTTGAG 43689 Query 121110 CTTGT 121114 ||||| Sbjct 43690 CTTGT 43694 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 || ||||| || ||||| || | |||| ||| ||| ||||| |||||||| || | Sbjct 211055 TCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACC-GTCTTCGAGTTGCTTGCCGGCAAA 211113 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 ||||||| ||||||||||| |||||||| || ||||| |||||| ||||| | Sbjct 211114 GATGAGCCTTTGCTGGTCGGGTGGGATGCCCTCTTTGTCTTGAATCTTTGCCTTGACATT 211173 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 |||| || ||| || |||||| || | || | || || || || ||||| || || Sbjct 211174 GTCAATGGTATCGCTGCTCTCCACCTCCAAAGTAATCGTCTTTCCAGTGAGAGTCTTCAC 211233 Query 133649 GAAAATCTGCAT 133660 |||||| ||||| Sbjct 211234 GAAAATTTGCAT 211245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417869261400