Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq318 113 1e-19 >seq318 Length=903324 Score = 113 bits (124), Expect = 1e-19 Identities = 213/310 (69%), Gaps = 5/310 (2%) Strand=Plus/Plus Query 110688 GTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAG 110744 || || ||| | ||||||||||| |||||||| || || | |||||||| ||| Sbjct 24147 GTCCCCATGCTGCGAGTCTTCAACAACACTGCACGCTACGTTGACCAAGGTGGCAACAAG 24206 Query 110745 AGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTA 110804 || |||| | ||||| ||||| ||| || ||||| || || || || || ||| | Sbjct 24207 AGGCCTGGCGCCTTTGCCATCTACGCCGAGCCCTGGCACTCTGACATTTTCGAGTTCCTG 24266 Query 110805 GAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATG 110864 || || || || ||||| ||| || ||| ||||||| || | || || || || Sbjct 24267 GACCTGCGCAAGAATCACGGAAAGGAGGAAGTGCGAGCACGCGAGCTGTTCTACGCGCTG 24326 Query 110865 TGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGT 110924 ||||| |||| | |||||||| ||||| || | || ||| |||| | ||||| Sbjct 24327 TGGATCCCAGACCTCTTCATGAAGCGTGTCGAACAGAACGGCGAGTGGAGCTTGATGTG- 24385 Query 110925 CCTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983 || || || | ||||| | | || || ||||| | |||||||||| || ||||| Sbjct 24386 CCCCAACGAGTGCCCTGGCATGGCCGAAGTCTATGGCGAGGAGTTTGAAGCGCTGTACGA 24445 Query 110984 AAAATATGAA 110993 ||| || ||| Sbjct 24446 AAAGTACGAA 24455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186805425071085