Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq275 120 7e-22 seq221 93.3 1e-13 seq233 91.5 3e-13 >seq275 Length=588737 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||| ||||| || || ||| ||| Sbjct 39200 CAGATTTTCGTCAAGACCCTGACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCGGAC 39259 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || || |||||| || ||| ||| Sbjct 39260 ACGATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCTCCTGACCAACAA 39319 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| | || ||||| |||||| || |||| |||||| || Sbjct 39320 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACTCTGTCCGACTACAACATC 39379 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||| |||||||||||||| Sbjct 39380 CAGAAGGAGAGCACTCTTCACCTTGT 39405 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||||||||| ||| ||||||| || ||||| | || |||||| ||||| || Sbjct 39405 ACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTCG 39346 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || |||||||| || |||||||| Sbjct 39345 AGCTGCTTGCCAGCGAAGATGAGACGTTGTTG 39314 >seq221 Length=819827 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| || || || || ||||| |||| || ||| Sbjct 381994 ACTGGCAAGACCATCACGCTGGAGGTCGAGAGCTCGGACACTATCGACAATGTCAAGGCC 382053 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || || ||| || || |||||| | ||||| || || ||| Sbjct 382054 AAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAACAAAGATTGATCTTTGCGGGCAAG 382113 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| ||||||||||| || | || |||||| | ||||| || || ||||| ||| Sbjct 382114 CAGCTGGAGGATGGAAGGACCCTGTCGGACTACAACATTCAGAAGGAATCCACTCTCCAC 382173 Query 206374 CTTGTTTTG 206382 || || ||| Sbjct 382174 CTCGTGTTG 382182 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 206243 CAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 |||| ||||| || ||| ||||| ||||| || ||| || ||| || | || ||| Sbjct 381815 CAGTCAAAGCCAA-GATCCAAGACAAAGAGGGCATTCCTCCCGACCAACAGCGTCTGATC 381873 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 || |||||||||||| | || ||||| || |||||| |||| |||||| |||||||||| Sbjct 381874 TTTGCCGGAAAGCAGCTCGAGGATGGCAGAACTTTGTCCGACTACAACATCCAGAAAGA 381932 >seq233 Length=223772 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| ||||| |||||||| ||||| || || || | || Sbjct 211230 AAGACTCTCACTGGAAAGACGATTACTTTGGAGGTGGAGAGCAGCGATACCATTGACAAT 211171 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| ||||| || || || ||| ||||| || ||||| Sbjct 211170 GTCAAGGCAAAGATTCAAGACAAAGAGGGCATCCCACCCGACCAGCAAAGGCTCATCTTT 211111 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| | ||||| || | || | | || |||||| ||||||| || | Sbjct 211110 GCCGGCAAGCAACTCGAAGACGGTCGCACGCTTTCTGACTACAACATCCAGAAGGAAAGT 211051 Query 206365 ACTCTTCA 206372 |||||||| Sbjct 211050 ACTCTTCA 211043 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| ||||| ||||| |||||||||||||| || || ||| || Sbjct 211470 CAGATCTTTGTCAAAACCCTCACCGGAAAGACGATCACTTTGGAGGTAGAGAGTAGCGAT 211411 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| ||||| |||||||| ||| || || ||| Sbjct 211410 ACCATTGACAACGTCAAGGCAAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAGCAA 211351 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || || || | ||||| || | || | |||| |||||| | Sbjct 211350 CGCCTCATTTTTGCTGGCAAACAACTCGAAGACGGTCGCACCCTTTCCGACTACAACATT 211291 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||| || |||||| Sbjct 211290 CAGAAGGAGAGCACGCTTCAC 211270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181813456091685