Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq318 178 1e-39 >seq318 Length=903324 Score = 178 bits (196), Expect = 1e-39 Identities = 933/1457 (64%), Gaps = 57/1457 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| ||||| ||||| || ||||||||||| | || | ||| ||| | ||| Sbjct 25246 TTGACAACTTGGAACTCTCCGGCCAGCACACGACGCGTGTAGATGTTGGATGTGTAGGGC 25187 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| | || || ||| | || || | |||| |||||||||||| || | | Sbjct 25186 TCAAAGCATTCGTTGAAGCCGAGAATCTGAGAGGTGGAGGCGGTAGGCATGGGTGCGAGC 25127 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGA--TGTTGTCCTTCAAAGTTTGCCAGTCCC 147070 | || || || || ||||||| || |||| | ||| ||||| || ||| |||| Sbjct 25126 AGCAGCGAGTTGCGAAGACCGT--GCTCGGAAATCTTGCTCTTCAGCGTGGTCCAATCCC 25069 Query 147071 ACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC--TCGACTGGCGGG 147128 ||| || || || ||| ||||||||||||||| ||| |||| | || |||||| Sbjct 25068 ACAAGTCAGAAGGTGTGACGCCCCACATGTCGTACTGCAGCTCTCCCTTGGA--GGCGGG 25011 Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAG 147188 ||| | | || |||| |||||||| || || | || || ||| || Sbjct 25010 CGAGCCTTGGTAGGTCTGGTAGGGACCGTCGCGTTGGGCAAGCTCGCAAGAGCGCTCCAG 24951 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || | | ||| ||||| ||| ||||| ||||| || | |||||| | | Sbjct 24950 TGCGGCGTGGTAGATGGTCTCGAAAATTTGCTTGTTGAGCTTGCGCGCTTC---GGGCGA 24894 Query 147249 GT--AAGGC-ATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGAT 147305 || ||||| || | || | || || |||||||||| ||| || | |||| |||||| Sbjct 24893 GTCAAAGGCCATGCCGAGGATCATGAAAGCATCGGCCAGACCTTGCACTCCGATGCCGAT 24834 Query 147306 AGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAAT 147365 || || || |||| || ||| | | | |||||||| |||| || || Sbjct 24833 GGGACGGTGACGGAAGTTGGAACGACGCGCCTCCTCGACGGGATAGTAGTTGACGTCGAT 24774 Query 147366 AATCTTGTTGAGGTTACGCACT-ACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424 || ||| ||||| | ||| | || || | | | | ||||||| || | | Sbjct 24773 GATGCGGTTCAGGTTGC-CACAGATGACCTTTGCGACGGCGTGAAGTTTCTTAAAGTTGT 24715 Query 147425 AAGTCCCGTCTTCGACACGT--ACGCAT--TGGTTCACGGCGATAGACGCCAGATTGCAG 147480 | | | | |||| || | | | ||| || |||||| || |||| |||||| Sbjct 24714 ACGACTTGG--TCGAAGTGTCGATGAACGATGG--CAGGGCGATGGATGCCAAGTTGCAG 24659 Query 147481 ACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTT 147539 ||||| ||| || |||| | ||||| | ||| |||| ||||||||| |||| || Sbjct 24658 ACGGCAACCTCGTCTGGCGCAGA-GTACTCGATGATCTCGGTGCACAGGTTACTGCTCTT 24600 Query 147540 TATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTA 147599 ||| |||| || | ||| ||||| || || || ||| || ||| | ||||| | Sbjct 24599 GATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCCTTGTACAGCATAAA 24540 Query 147600 CGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG-CAGGTCCTGCGC-TCGC 147657 || ||| ||||||| ||||| ||| | ||| | || ||| | ||||| | | Sbjct 24539 GGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATGG-CGTACCACAGCTTTTGCGCCTTGA 24481 Query 147658 ACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCG 147717 || || ||| ||||| ||||||| ||||||| | |||||||| ||| Sbjct 24480 TGGTGC-GCTTGGCGCGACCCTCCGCTTCGTACTTTTCGTACAGCGCTTCAAACTCCTCG 24422 Query 147718 CCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCC 147777 || ||| ||||| | ||| || |||| | || ||||||| |||| | ||| | Sbjct 24421 CCATAGACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTCCACTCGCCGTTC 24362 Query 147778 GCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT 147837 | || || ||| || || || || | |||||||||||| | || ||||| ||| Sbjct 24361 TGTTCGACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAACAGCTCGCGTGCT 24302 Query 147838 TTGCAAT----CCTCGGCGCCCATGTTGCGTTTCAAATTAAGCA-CGCTATAGATGTCGG 147892 ||| | ||| || | ||||| || | || | | | | | ||||| | Sbjct 24301 C-GCACTTCCTCCTTTCCGTGATTCTTGCG---CAGGTCCAGGAACTCGAAA-ATGTCAG 24247 Query 147893 CGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGA 147949 ||||||||| || ||||| ||| | || || | ||| || || ||||| | Sbjct 24246 AGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTGCCACCTTGGTCAA 24187 Query 147950 CATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGT 148009 | | ||| | ||||||| || || |||| |||||| | | |||| | | ||| | Sbjct 24186 CGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCGTTGCTAAAGCCAT 24127 Query 148010 TGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGC 148069 ||||| || | ||| ||| | | || | | ||| | | | | ||| || || | Sbjct 24126 TGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATGCTCAGGCCTATACCAC 24067 Query 148070 CGCCGTACTT--TGAT-ATGGCAGCGCAATCGCCC----AATGTCGTGTAGATGCCGTCG 148122 || | ||| | || ||||| ||| || | | |||||| ||||||||||| Sbjct 24066 CGGCAGTCTTGCTAATCATGGC---GCA--CGTCTTGAGAGTGTCGT--AGATGCCGTCG 24014 Query 148123 ATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCC 148182 |||||||| | || | || | | || ||||| | | ||| || |||| || Sbjct 24013 ATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGCCG 23954 Query 148183 GCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTC 148242 || ||| ||||| || ||||| ||||| | |||| ||| | | |||||| Sbjct 23953 GCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTTGTACGTC 23894 Query 148243 TCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGC 148302 ||||| || |||| ||| |||||||| ||||| | ||||||||||| | ||||||| Sbjct 23893 TCAATCACGGAATCGACGTCATCGCCGTGGATGCCAACGGCGACGCGCATAATCATGTGC 23834 Query 148303 TGTGGTCGTTCGGCAAC 148319 || || |||||||| || Sbjct 23833 TGAGGACGTTCGGCGAC 23817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608310544600