Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq233 163 4e-34 seq318 122 1e-21 >seq233 Length=223772 Score = 163 bits (180), Expect = 4e-34 Identities = 365/537 (68%), Gaps = 11/537 (2%) Strand=Plus/Minus Query 1455791 CAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGT 1455850 ||| ||||| ||||| || ||||||||||| || || |||| ||| || ||| | Sbjct 43765 CAAGAAGGCAGAGGCATCTTTTTGGACCGCAGAAGAAATCGATCTCAGCAAGGACCTGCA 43706 Query 1455851 CCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907 | |||| ||| | |||| | ||| | || || || ||||| |||||||| Sbjct 43705 TGATTGGGACAACAAGCTCAACGACAATGAGAGGCACTTTGTCTCTCACGTGCTCGCCTT 43646 Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967 ||| || || || ||||||||| |||||| ||| | || || | |||||| Sbjct 43645 CTTT-GCAGCTTCGGACGGCATCGTGAATGAGAACTTGGTGGAGCGATTCTCGCAAGAGG 43587 Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027 | ||| ||||||| | | |||||||| ||||| ||| || || ||||| |||| Sbjct 43586 TGCAAGCAGCAGAGGCCAGATGCTTTTACGGTTTCCAAATCATGATGGAGAACATTCACT 43527 Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACC 1456087 | || || ||||| || || |||||||| || || || || | ||| || | Sbjct 43526 CGGAGACTTACTCTCTGCTCATCGACACTTATATCCGCGAACCAGAGCAGAGAGAGTTCT 43467 Query 1456088 TCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGT 1456147 | ||| ||| |||| ||| | || ||| | | ||||||| |||||||| | | || Sbjct 43466 TGTTTGATGCCGTCGAGACGATTCCCGTGGTCAAGCAAAAGGCTGACTGGGCACTCAGGT 43407 Query 1456148 GGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGA 1456206 ||||| | | || || | ||| ||||| | || ||| ||||||||| ||||| Sbjct 43406 GGATCTCCGAC-AGACGATCTTC-CTTCTCCGAGAGACTGATCGCCTTTGCCGCCGTCGA 43349 Query 1456207 GGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCA 1456265 ||||||||| ||||| || ||| ||| |||||||||||||||||||| | || || | Sbjct 43348 GGGCATCTTCTTCTCCGGATCTTT-TGCTTCCATCTTTTGGCTCAAGAAGAGGGGTCTGA 43290 Query 1456266 TGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAA-GTTTTCACCCC 1456321 |||| || | | |||| ||| || | ||| || |||||| || ||||| || Sbjct 43289 TGCCGGGAC-TGAGCTTCTCCAATGAGCTCATCTCCCGAGACGAAGGTCTTCACACC 43234 >seq318 Length=903324 Score = 122 bits (134), Expect = 1e-21 Identities = 181/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || || ||||| || ||||||||||| | ||| || ||||||||||| || | | Sbjct 23937 CCGACCCTCTTCAACGCCGGCACGCCTCACCCTCAACTCTCGTCGTGCTTCCTCGTCTGC 23996 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| || ||||| |||||||| ||||| |||||| |||||| | || | Sbjct 23997 ATGAAGGATGACAGCATCGACGGCATCTACGACACTCTCAAGACGTGCGCCATGATTAGC 24056 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| | ||||| || || || | | ||||| | |||| | | || |||| | Sbjct 24057 AAGACTGCCGGTGGTATAGGCCTGAGCATCCACAACATTCGCGGCACCGGAAGCTACATT 24116 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || |||||||| ||| ||||||| | || |||||||| || || || ||| |||| Sbjct 24117 GCAGGCACCAATGGCTTTAGCAACGGCATCGTCCCCATGCTGCGAGTCTTCAACAACACT 24176 Query 260165 GCGCGCTACGTCGACCA 260181 || |||||||| ||||| Sbjct 24177 GCACGCTACGTTGACCA 24193 Score = 87.8 bits (96), Expect = 3e-11 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| ||||| | | || || |||||||| |||| |||| ||| | |||||||| Sbjct 24498 TGGTACGCCATCTTGGAAGCGCAAATCGAGACTGGCAACCCCTTTATGCTGTACAAGGAT 24557 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAACCTGTG 262215 || | |||| | ||||||||| ||||||||||||||| | |||| |||||||| Sbjct 24558 GCGGCGAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCA-AGAGCAGTAACCTGTG 24616 Query 262216 CACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGG 262250 |||||||||| || ||| || |||| ||||| Sbjct 24617 CACCGAGATCATCGAGTACTCTGCGCCAGACGAGG 24651 Score = 87.8 bits (96), Expect = 3e-11 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 263341 GGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTC 263400 || |||||||| |||| |||||||||||||||| |||| || |||||||||||||| ||| Sbjct 25524 GGACTCAAGACGGGCACGTACTATCTGCGCACCAGGCCTGCCGCCAACGCCATTCAGTTC 25583 Query 263401 ACCGTC 263406 |||||| Sbjct 25584 ACCGTC 25589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177764420858570