Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq233 116 3e-21 seq221 114 1e-20 >seq233 Length=223772 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||| |||||||| ||||||||||| |||| Sbjct 211247 CCACCACGGAGACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 211306 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || || || || || ||||| || | || ||||| || | |||| Sbjct 211307 AGGGTGCGACCGTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGA 211366 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || || ||||| ||||||| ||| | |||| | | || ||||| || || Sbjct 211367 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGA-CGTTGTCAATGGTATCGCTACTCTCTAC 211425 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| |||||||| || || || | ||||| ||||| |||||||| Sbjct 211426 CTCCAAAGTGATCGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 >seq221 Length=819827 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| || | |||||| | || | || ||||| ||||||||||| || | | Sbjct 382196 CCGCCACGCAAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 382137 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| | | || ||||||||||| |||||||| ||||| | || || || | |||| Sbjct 382136 AGGGTCCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGA 382077 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||||||| |||||| ||| | | | | | ||||| |||| || Sbjct 382076 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTC---TCG 382020 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| |||||| || || || ||||| || |||||||| || ||||| Sbjct 382019 ACCTCCAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450790867063800