Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq318 188 7e-43 seq233 125 7e-24 seq221 109 6e-19 seq275 82.4 8e-11 >seq318 Length=903324 Score = 188 bits (208), Expect = 7e-43 Identities = 913/1432 (64%), Gaps = 35/1432 (2%) Strand=Plus/Plus Query 7551 CGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACAT 7610 ||| ||||| ||| |||||| | ||||||| || || ||||| |||||||| ||| | Sbjct 23819 CGCCGAACGTCCTCAGCACATGATTATGCGCGTCGCCGTTGGCATCCACGGCGATGACGT 23878 Query 7611 TGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCC 7670 || ||| | || |||||| | | ||||| || | ||||| ||||| || || Sbjct 23879 CGATTCCGTGATTGAGACGTACAACCTCATGTCCGAAAAGTACTTTACCCACGCCTCCCC 23938 Query 7671 CACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCAT 7730 ||| | || ||| ||||| |||||| | || ||||| || | | ||| Sbjct 23939 GACCCTCTTCAACGCCGGCACGCCTCACCCTCAACTCTCGTCGTGCTTCCTCGTCTGCAT 23998 Query 7731 GCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCA 7789 | || ||||||||||||||||| ||| |||| || | || ||||||| ||| || Sbjct 23999 GAAGGATGACAGCATCGACGGCATCTACGACACTCT-CAAGACGTGCGCCATGATTAGCA 24057 Query 7790 AATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCG 7849 | | ||| || ||||| |||| | | || || | |||| || ||| ||| ||| | Sbjct 24058 AGACTGCCGGTGGTATAGGCCTGAGCATCCACAACATTCGCGGCACCGGAAGCTACATTG 24117 Query 7850 TGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGG 7909 |||||| || || ||| | | |||||| |||| || ||||| ||| | | Sbjct 24118 CAGGCACCAATGGCTTTAGCAACGGCATCGTCCCCATGCTGCGAGTCTTCAACAACACTG 24177 Query 7910 TGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGC 7966 || | || ||||| || || ||| | |||||| ||||||||| |||| Sbjct 24178 CACGCTACGTTGACCAAGGTGGCAACAAGAGGCCTGGCGCCTTTGCCATCTACGCCGAGC 24237 Query 7967 CGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCG-TCGCAACATGGGTTGCGAAGAC 8025 | |||||| | ||||||| || | || | ||||| | | || || | || || Sbjct 24238 CCTGGCACTCTGACATTTTCGAGTTCCTGGACCTGCGCAAGAATCACGGAAAG-GAGGAA 24296 Query 8026 AGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTT 8085 ||| ||||| || |||| || ||||| | || || || || |||| ||| || Sbjct 24297 GTGCGAGCACGCGAGCTGTTCTACGCGCTGTGGATCCCAGACCTCTTCATGAAGCGTGTC 24356 Query 8086 CATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTT 8145 | ||| | ||| | ||||||||| | |||||| | | || Sbjct 24357 GAACAGAACGGCGAGTGGAGCTTGATGTGCCCCAACGAGTGCCCTGGCATGGCCGAAGTC 24416 Query 8146 TACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGG-CGCG-TACGTGC 8203 || || | |||||| ||||| || | |||||| || || |||| | | || Sbjct 24417 TATGGCGAGGAGTTTGAAGCGCTGTACGAAAAGTACGAAGCGGAGGGTCGCGCCAAGCGC 24476 Query 8204 GGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTA 8263 || | || |||| | ||| |||||| | ||| |||| ||| || || | Sbjct 24477 ACCA--TCAAGGCGCAAAAGCTGTGGTACGCCATCTTGGAAGCGCAAATCGAGACTGGCA 24534 Query 8264 TGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCA 8323 || | ||||||||||| || || ||| ||| ||||| || | ||| |||||| Sbjct 24535 ACCCCTTTATGCTGTACAAGGATGCGGCGAACCGCAAGAGCAACCAGAAGAACCTGGGCA 24594 Query 8324 CCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGG 8383 |||| |||| || |||||| | || || | ||||| ||||| ||||| || | Sbjct 24595 CCATCAAGAGCAGTAACCTGTGCACCGAGATCATCGAGTACTCTGCGCCAGACGAGGTTG 24654 Query 8384 CCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCT----CAAAC 8439 |||| ||||| | || || | | || ||||| |||||| || | || Sbjct 24655 CCGTCTGCAACTTGGCATCCATCGCCCT----GCCATCGTTCATCGACACTTCGACCAAG 24710 Query 8440 ACTTACGACTTTGAACAATTGAAAAACGCCGT-GCAA--GTGA-CGGTACGCAATTTAGA 8495 | ||| ||||| | || | ||||||| |||| || | | || |||| | | Sbjct 24711 TCGTACAACTTTAAGAAACT---TCACGCCGTCGCAAAGGTCATCTGT-GGCAACCTGAA 24766 Query 8496 TCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCG-CGTATCGAACATGCGCC 8554 |||||||| || ||||| | |||||| | || || ||||| ||| || ||| | || | Sbjct 24767 CCGCATCATCGACGTCAACTACTATCCCGTCGAGGAGGCGCGTCGT-TCCAACTTCCGTC 24825 Query 8555 ACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGC---GCC 8611 || | ||| | ||| | || ||||||||||||||||| || || |||| | | || Sbjct 24826 ACCGTCCCATCGGCATCGGAGTGCAAGGTCTGGCCGATGCTTT---CATGATCCTCGGCA 24882 Query 8612 TCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATT 8671 | ||| || | |||||||||| |||||||| |||| || || | || Sbjct 24883 TGGCCTTTGACTCGCCCGAAGCGCGCAAGCTCAACAAGCAAATTTTCGAGACCATCTACC 24942 Query 8672 ACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACG 8731 ||| |||| | || | || | ||||||| | || | ||| | | ||| Sbjct 24943 ACGCCGCACTGGAGCGCTCTTGCGAGCTTGCCCAACGCGACGGTCCCTACCAGACCTACC 25002 Query 8732 CGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCT 8791 ||| || ||| | ||| |||| |||||||||||| ||||| || | Sbjct 25003 AAGGCTCGCCCGCCTCCAAGGGAGAGCTGCAGTACGACATGTGGGGCGTCACACCTTCTG 25062 Query 8792 CTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGC 8851 |||||| |||||| | |||| |||| ||| | | |||| | ||||| |||| Sbjct 25063 ACTTGTGGGATTGGACCACGCTGAAGAGCAAGATTTCCGAGCACGGTCTTCGCAACTCGC 25122 Query 8852 TGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCT 8911 || || | || |||||| |||||| | || |||| || | || |||||||| || Sbjct 25123 TGCTGCTCGCACCCATGCCTACCGCCTCCACCTCTCAGATTCTCGGCTTCAACGAATGCT 25182 Query 8912 TTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTT 8963 ||||||| | ||| |||| | ||| | | || ||| ||||||| || || Sbjct 25183 TTGAGCCCTACACATCCAACATCTACACGCGTCGTGTGCTGGCCGGAGAGTT 25234 >seq233 Length=223772 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| |||||| ||||| ||||||||||||||| | Sbjct 211247 CCACCACGGAGACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 211306 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || ||| ||||| |||||||| |||||||| | || |||||||| || || Sbjct 211307 AGGGTGCGACCGTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGA 211366 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| ||||| || ||| ||||| ||| | || ||| || || Sbjct 211367 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACC 211426 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || || || ||||| | ||||| || || || ||||| Sbjct 211427 TCCAAAGTGATCGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 134522 TTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581 |||||| || ||||||||||| || ||| || ||| ||||| || ||||| ||||| Sbjct 211054 TTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCAAA 211113 Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641 || | | ||||| ||||| || ||||| ||||| |||||||| ||| ||||| Sbjct 211114 GATGAGCCTTTGCTGGTCGGGTGGGATGCCCTCTTTGTCTTGAATCTTTGCCTTGACATT 211173 Query 134642 GTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 ||| | || ||| ||||| || | |||||| || || || || | ||| || || Sbjct 211174 GTCAATGGTATCGCTGCTCTCCACCTCCAAAGTAATCGTCTTTCCAGTGAGAGTCTTCAC 211233 Query 134702 GAAAATTTGCAT 134713 |||||||||||| Sbjct 211234 GAAAATTTGCAT 211245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 134529 TGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAA 134588 || ||||||||||||| | |||| | ||| |||||||| |||||||| || || | | Sbjct 211970 TGGATGTTGTAGTCGCTCAAGGTGCGGCCGTCTTCGAGCTGCTTGCCTGCGAAGATGAGA 212029 Query 134589 CGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT 134648 || || || || || || || || || || ||||| || || |||||| ||| | Sbjct 212030 CGTTGTTGGTCAGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGATA 212089 Query 134649 GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| || || || || || ||||| || || || || || Sbjct 212090 GTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTGCCAGT 212130 >seq221 Length=819827 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||||||||||||| || ||||||||||| |||||||||||||| | ||| Sbjct 382184 CGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGGGTCCTTCCA 382125 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| ||||| ||||| ||||| | || |||||||| || || || || || Sbjct 382124 TCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGAATACCCTCCTTG 382065 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || || ||||| ||| | ||||| || || || || || || ||| Sbjct 382064 TCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTCTCGACCTCCAGCGTGATG 382005 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || || |||||||| Sbjct 382004 GTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || | ||||| || | ||| ||| || || ||||||||||| | | Sbjct 381968 CCTCCGCGAAGACGAAGGACGAGATGCAAGGTGCTTTCTTTCTGGATGTTGTAGTCGGAC 381909 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | || | || |||||||| || || ||||| |||| |||||| || ||||| || Sbjct 381908 AAAGTTCTGCCA-TCCTCGAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCGGGAGG 381850 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 ||||| ||||| ||||| || || |||||| ||| Sbjct 381849 AATGCCCTCTTTGTCTTGGATCTTGGCTTTGACTGCG 381813 >seq275 Length=588737 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGT 134562 ||| ||||| || ||| ||||| || ||||||||||| | || | || | || | Sbjct 39406 CACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCA-TCCT 39348 Query 134563 CGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTT 134622 ||||||| ||||| || || || | ||| || || || || || || || || || |||| Sbjct 39347 CGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTT 39288 Query 134623 GAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTT 134682 | || || || || ||| | ||||| || || || || || | || ||||| | Sbjct 39287 GGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCT 39228 Query 134683 TACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719 |||| || | || || |||||||| ||||| |||| Sbjct 39227 TACCCGTCAGGGTCTTGACGAAAATCTGCATGCTGTT 39191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505395336022200