Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq233 127 3e-24 >seq233 Length=223772 Score = 127 bits (140), Expect = 3e-24 Identities = 360/548 (66%), Gaps = 10/548 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || || || || |||| || | || || || || | || Sbjct 43222 GCAGGCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAG 43281 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 ||| ||||| ||||| | ||| ||||||||||| |||| |||||||||||| || ||||| Sbjct 43282 TCCCGGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAAGAA 43341 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT-- 39793 |||||| || || || ||||| || | |||||||| | || ||| | ||| Sbjct 43342 GATGCCCTCGACGGCGGCAAAGGCGATCAGTCTCTCGGAG-AAGGAAGATC-GTCTGTCG 43399 Query 39794 ---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 |||||| | ||||||| ||||| || | ||| || || || || || | ||| Sbjct 43400 GAGATCCACCTGAGTGCCCAGTCAGCCTTTTGCTTGACCACGGGAATCGTCTCGACGGCA 43459 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||| | | | | | | || || | ||| || || || | |||| || Sbjct 43460 TCAAACAAGAACTCTCTCTGCTCTGGTTCGCGGATATAAGTGTCGATGAGCAGAGAGTAA 43519 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 | || || || ||||| || ||| || || || |||||||| ||||| || || | Sbjct 43520 GTCTCCGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAAAAGCATCTGGCCTCTGCT 43579 Query 39971 ATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030 ||| |||||| | |||| ||| |||| || |||||||| || || || ||| Sbjct 43580 GCTTGCACCTCTTGCGAGAATCGCTCCACCAAGTTCTCATTCACGATGCCGTCCGAAGCT 43639 Query 40031 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTG-TCAATTTATTC 40087 ||||| || || | || || | ||| | | |||| | | || | || | | Sbjct 43640 GCAAAGAAGGCGAGCACGTGAGAGACAAAGTGCCTCTCATTGTCGTTGAGCTTGTTGTCC 43699 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 || |||| | || || | ||| | |||||| || |||||||| || ||||||||| Sbjct 43700 CAATCATGCAGGTCCTTGCTGAGATCGATTTCTTCTGCGGTCCAAAAAGATGCCTCTGCC 43759 Query 40148 TTTTTGTA 40155 || ||||| Sbjct 43760 TTCTTGTA 43767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904635615400