Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq318 138 1e-27 seq233 102 1e-16 >seq318 Length=903324 Score = 138 bits (152), Expect = 1e-27 Identities = 887/1401 (63%), Gaps = 45/1401 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | |||||| || ||||||||||| || || | || || | |||||| Sbjct 25208 GTAGATGTTGGATGTGTAGGGCTCAAAGCATTCGTTGAAGCCGAGAATCTGAGAGGTGGA 25149 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||| || ||||| ||||| | || || ||| |||||||| | ||| || | | | Sbjct 25148 GGCGGTAGGCATGGGTGCGAGCAGCAGCGAGTTGCGAAGACCGTGCTCGGAAAT-CTTGC 25090 Query 110827 -CTTGAGAACATCCCAGTCGTAGTTG--AGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 ||| || ||| || | | || ||| | || |||||||||| |||| Sbjct 25089 TCTTCAGCGTGGTCCAATCCCACAAGTCAGAA-GGTGTGACGC-CCCACATGTCGTACTG 25032 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 ||| | || | ||| ||||| || || | |||| | |||| ||| | | || || Sbjct 25031 CAGCTCTCCCTTGGAGGCGGGCGAGCCTTGGTAGGTCTGGTAGGGACCGTCGCGTTGGGC 24972 Query 110944 CAATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 | || || | ||| ||||| | ||||| || ||||| || || || | || | Sbjct 24971 AAGCTCGCAAGAGCGC-TCCAGTGCGGCGTGGTAGATGGTCTCGAAAATTTGCTTGTTGA 24913 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 || ||||| || ||||| || || | | || || |||| || |||| Sbjct 24912 GCTTGCGCGCTTCGGGCGAGTCAAAGGCCATGCCGAGGATCATGAAAGCATCGGCCAGAC 24853 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGG 111122 |||| || || | || || || | ||| || | || || ||||| ||| |||| Sbjct 24852 CTTGCACTCCGATGCCGATGGGACGGTGACGGAAGTTGGAACGACGCGCCTCCTCGACGG 24793 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA----ATCTTTGTGATT 111178 |||| | || ||| |||| ||||| || || | ||| | ||||| || Sbjct 24792 GATAGTAGTTGACGTCGATGATGCGGTTCAGGTT----GCCACAGATGACCTTTGCGACG 24737 Query 111179 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTC--ATTGAC-AT--ACTTTGGAA 111233 | |||||||| | | | | || ||| | | || | || | || || ||| | Sbjct 24736 GCGTGAAGTTTCTTAAAGTT----GTACGACT-TGGTCGAAGTGTCGATGAACGATGGCA 24682 Query 111234 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 111293 ||||||| |||||||| ||||| || || ||| || | | |||||| | || | Sbjct 24681 GGGCGATGGATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATGATCT 24622 Query 111294 CTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGC 111353 | || || | ||| ||||| || || |||| ||||| ||||| ||||| ||| Sbjct 24621 CGGTGCACAGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCG 24562 Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413 |||||||||||| ||||| |||| | || ||||| | || | || | || || | Sbjct 24561 CCGCATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGT 24502 Query 111414 TCCA-AACATCGGCGGCTGGTACAATGGCG---TTGGCCCGTCCCTCCGCCTCGTACTTT 111469 ||| | | | ||| || | |||| | ||||| || |||||||| ||||||||| Sbjct 24501 ACCACAGCTTTTGCGCCTTG----ATGGTGCGCTTGGCGCGACCCTCCGCTTCGTACTTT 24446 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA 111529 ||| || |||||||||||||| || | |||| | || || || || || Sbjct 24445 TCGTACAGCGCTTCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGGG 24386 Query 111530 CAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589 || | | ||| | || | || || ||||||||||| |||||||| |||||| Sbjct 24385 CACATCAAGCTCCACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCAC 24326 Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 || | | || || || | || | || || | || || || || | || Sbjct 24325 AGCGCGTAGAACAGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCAGGTCC 24266 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG----ATCCCTT 111705 |||||||| | || || | |||||| ||||| |||| || | | | ||| Sbjct 24265 AGGAACTCGAAAATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTC 24206 Query 111706 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 | | | ||| |||| | || ||||| || ||| ||| || || || ||||| || | Sbjct 24205 TTGTTG-CCACCTTGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGAC 24147 Query 111766 AATACCATCTGATTGA-CCATTTGTCCCCCGAATACGAGATT-TATTGGCTCTCACATCA 111823 || || | || | | ||||| || || ||| || || || | | | | Sbjct 24146 GATGCCGT-TGCTAAAGCCATTGGTGCCTGCAAT-GTAGCTTCCGGTGCCGCGAATGTTG 24089 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 |||||| || || ||||| || || ||| || || ||| | | ||||| Sbjct 24088 TGGATGCTCAGGCCTATACCACCGGCAGTCTTGCTAATCATGGCGCACGTCTTGAGAGTG 24029 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 | ||||| |||| ||| ||| ||||| || || |||||||| || | || Sbjct 24028 TCGTAGATGCCGTCGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGA 23969 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGA 112002 || || || || || ||||||||||| || | ||||| | || ||| || ||| Sbjct 23968 GGGTGAGGCGTGCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGT-AAAGTACTTTTCGGA 23910 Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062 ||| || ||| ||||| | || ||||| | ||| || ||||||||||| | ||||| Sbjct 23909 CATGAGGTTGTACGTCTCAATCACGGAATCGACGTCATCGCCGTGGATGCCAACGGCGAC 23850 Query 112063 CCGCATGAACATGTACTGTGG 112083 ||||| | ||||| ||| || Sbjct 23849 GCGCATAATCATGTGCTGAGG 23829 >seq233 Length=223772 Score = 102 bits (112), Expect = 1e-16 Identities = 122/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| ||||| || |||||||| || || ||||| ||||||| || || Sbjct 43225 GGCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAGTCC 43284 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 122776 ||||| ||||||| |||||| | |||| | || | ||| || || ||||||||||||| Sbjct 43285 CGGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAA-GATCCGGAGAAGAAGA 43343 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 | ||||| || ||||| || | || | |||| |||||| Sbjct 43344 TGCCCTCGACGGCGGCAAAGGCGATCAGTCTCTCGGAGAAGGA 43386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028192556000