Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq318 143 3e-29 seq233 111 2e-19 >seq318 Length=903324 Score = 143 bits (158), Expect = 3e-29 Identities = 551/855 (64%), Gaps = 13/855 (2%) Strand=Plus/Minus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 || |||||||| || |||| || || || | ||| || ||| |||||| || Sbjct 24685 GGCAGGGCGATGGATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATG 24626 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || ||||||| ||| ||||| |||||||||| |||||| || || ||| | Sbjct 24625 ATCTCGGTGCACAGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGG 24566 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || |||||||||||| ||||| | || | || ||||| |||| | | | || Sbjct 24565 TTCGCCGCATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATG 24506 Query 118884 GCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTT 118942 || | ||| | | | || || | | ||| ||||| || ||||| | |||||||| Sbjct 24505 GCGTACCACAGCTTTTGCGCCTTG-ATGGTGCGCTTGGCGCGACCCTCCGCTTCGTACTT 24447 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002 | ||| || ||||||||||| || || | | || | | || || || | || Sbjct 24446 TTCGTACAGCGCTTCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGG 24387 Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062 ||| | | ||| | || || || || |||||||||||||||||||||||||| Sbjct 24386 GCACATCAAGCTCCACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCA 24327 Query 119063 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 119122 ||||| |||| || || || || |||| || | || ||||| |||| || Sbjct 24326 CAGCGCGTAGAACAGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCAGGTC 24267 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CT 119178 || || || | || || | |||||| || || ||| | || | | || || Sbjct 24266 CAGGAACTCGAAAATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCT 24207 Query 119179 TACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAA 119238 | | ||| | |||| || || | |||||| ||| || || || ||||| || | Sbjct 24206 CTTGTTG-CCACCTTGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGA 24148 Query 119239 TGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTAT--TGGCTCTGACATC 119296 ||| || | | |||||| || || ||| || ||| || | | | | Sbjct 24147 CGATGCCGTTGCTAAAGCCATTGGTGCCTGCAATGT-AG-CTTCCGGTGCCGCGAATGTT 24090 Query 119297 GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACT 119356 ||||||| || || ||||| || || ||| || |||||| | ||||| | Sbjct 24089 GTGGATGCTCAGGCCTATACCACCGGCAGTCTTGCTAATCATGGCGCACGTCTTGAGAGT 24030 Query 119357 GCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTG 119416 | ||||||| || ||||| |||| |||| | || ||||||||| ||| | ||| Sbjct 24029 GTCGTAGATGCCGTCGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTG 23970 Query 119417 AGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC-CTTGGG 119475 ||| || || || ||||||||||| || || | |||||| | || ||| || || Sbjct 23969 AGGGTGAGGCGTGCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGT-AAAGTACTTTTCGG 23911 Query 119476 ACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGA 119535 |||| || ||| ||||| | |||| | ||| || ||||| || || | | || Sbjct 23910 ACATGAGGTTGTACGTCTCAATCACGGAATCGACGTCATCGCCGTGGATGCCAACGGCGA 23851 Query 119536 CCCGCATAAACATGT 119550 | ||||||| ||||| Sbjct 23850 CGCGCATAATCATGT 23836 >seq233 Length=223772 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| ||||| ||||| ||||||||||| ||||| ||||||| ||| || Sbjct 43225 GGCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAGTCC 43284 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| ||||||| |||||| | ||| || || | | ||| || || ||||||||||| Sbjct 43285 CGGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAAGAAGAT 43344 Query 130135 CCCCTCCAC 130143 ||||| || Sbjct 43345 GCCCTCGAC 43353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431450736600