Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq318 140 4e-28 seq233 107 2e-18 >seq318 Length=903324 Score = 140 bits (154), Expect = 4e-28 Identities = 885/1396 (63%), Gaps = 37/1396 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | |||||||| ||| | || || || || || ||| | ||||| || Sbjct 23829 CCTCAGCACATGATTATGCGCGTCGCCGTTGGCATCCACGGCGATGACGTCGATTCCGTG 23888 Query 104282 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || |||||| || ||| || | ||||| | || |||||||| Sbjct 23889 ATTGAGACGTACAACCTCATGTCCGAAAAGTACTTT-ACCCACGCCTCCCCGACCCTCTT 23947 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || || ||| | || |||||||| || || ||||| || Sbjct 23948 CAACGCCGGCACGCCTCACCCTCAACTCTCGTCGTGCTTCCTCGTCTGCATGAAGGATGA 24007 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| |||| ||||| | ||||| | | ||| || || ||| || || Sbjct 24008 CAGCATCGACGGCATCTACGACACTCTCAAGACGTGCGCCATGATTAGCAAGACTGCCGG 24067 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATA-AATCTCGTATTCGGGGGACAA 104519 ||||| || || |||||| | | | | || || || ||| || || | Sbjct 24068 TGGTATAGGCCTGAGCATCCACAACATTCGCGGCACCGGAAGCTAC-ATTGCAGGCACCA 24126 Query 104520 ATGG-TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 |||| | | || | || || | || ||||| || || || ||| ||| || ||||| Sbjct 24127 ATGGCTTTAGCA-ACGGCATCGTCCCCATGCTGCGAGTCTTCAACAACACTGCACGCTAC 24185 Query 104579 GTAAATCAAGCTGGGCGTCGAAAGGGAT----CTATCGCAGTCTATCTTGAGCCATGGCA 104634 || | |||| ||| | | | ||| | | | || |||| ||||| ||||| Sbjct 24186 GTTGACCAAGGTGG-CAACAAGAGGCCTGGCGCCTTTGCCATCTACGCCGAGCCCTGGCA 24244 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 | | || || | |||||||| || |||| || || || | ||||| | ||| Sbjct 24245 CTCTGACATTTTCGAGTTCCTGGACCTGCGCAAGAATCACGGAAAGGAGGAAGTGCGAGC 24304 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||||| || |||| ||| || ||||| ||||| |||||||||||| | || || ||| Sbjct 24305 ACGCGAGCTGTTCTACGCGCTGTGGATCCCAGACCTCTTCATGAAGCGTGTCGAACAGAA 24364 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 ||| | ||| | | || || || || ||||| | |||| | | || || Sbjct 24365 CGGCGAGTGGAGCTTGATGTGCCCCAACGAGTGCCCTGGCATGGCCGAAGTCTATGGCGA 24424 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-ACGGTGC 104873 |||||||||||| || ||| ||||||||| | || ||||| || | ||| || | | Sbjct 24425 GGAGTTTGAAGCGCTGTACGAAAAGTACGAAGCGGAGGGTCGCGCCA-AGCGCACCAT-C 24482 Query 104874 CAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 || || | | ||||| | || || | | | |||| ||||||||| | || | Sbjct 24483 AAGGCGCAAAAGCTGTGGTACGCCATCTTGGAAGCGCAAATCGAGACTGGCAACCCCTTT 24542 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 ||||| ||||| || || |||| ||||| || || ||||| |||| |||||| Sbjct 24543 ATGCTGTACAAGGATGCGGCGAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCAAG 24602 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 || || || || || || ||| | || | | | ||| ||| || || || Sbjct 24603 AGCAGTAACCTGTGCACCGAGATCATCGAGTACTCTGCGCCAGACGAGGTTGCCGTCTGC 24662 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112 ||| | ||||| ||||| || || || | || | ||| ||| | | | | | Sbjct 24663 AACTTGGCATCCATCGCCCTGCCATCGTTCATCGACACTTCGACCAAGTCGTACAACTTT 24722 Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACC---AAAAACCTAAACAGAGTTATTGAT 105169 | ||||| |||| || || ||| |||| | ||||| ||| | | || || Sbjct 24723 AAGAAACTTCACGCCGT--CGCAAA-GGTCATCTGTGGCAACCTGAACCGCATCATCGAC 24779 Query 105170 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 || | || ||||| ||| || ||| || || | | |||||||| || || Sbjct 24780 GTCAACTACTATCCCGTCGAGGAGGCGCGTCGTTCCAACTTCCGTCACCGTCCCATCGGC 24839 Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCA-CGCATTTGATTCCGA 105288 |||| || || ||||| || |||| |||| | | ||| || || ||||| || Sbjct 24840 ATCGGAGTGCAAGGTCTGGCCGATGCTTTCA-TGATCCTCGGCATGGCCTTTGACTCGCC 24898 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 ||||||| | |||| || || || |||||||| || |||||||| || ||| Sbjct 24899 CGAAGCGCGCAAGCTCAACAAGCAAATTTTCGAGACCATCTACCACGCCGCACTGGAGCG 24958 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 || ||| | || | || ||||| || | |||| | || || || || || Sbjct 24959 CTCTTGCGAGCTTGCCCAACGCGACGGTCCCTACCAGACCTACCAAGGCTCGCCCGCCTC 25018 Query 105409 ACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTC--AC---TACGA 105462 |||||| | ||| || | || ||||||| | | | | |||| || | || Sbjct 25019 -CAAGGGAGAGCTGCAGTACGACATGTGGG-----GCGTCACACCTTCTGACTTGTGGGA 25072 Query 105463 CTGGGAAGCTCTCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 ||| | || ||| | | | || ||| | |||||||| ||| || || | | Sbjct 25073 TTGGACCACGCTGAAGAGCAAG-ATTTCCGAGCACGGTCTTCGCAACTCGCTGCTGCTCG 25131 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 | || ||||| || ||||||||| | || || | || || ||||||||||| |||| Sbjct 25132 CACCCATGCCTACCGCCTCCACCTCTCAGATTCTCGGCTTCAACGAATGCTTTGAGCCCT 25191 Query 105582 ACACGACGAACATCTA 105597 |||| | |||||||| Sbjct 25192 ACACATCCAACATCTA 25207 >seq233 Length=223772 Score = 107 bits (118), Expect = 2e-18 Identities = 123/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 |||||| | ||| |||| |||| ||||| || ||||| ||||||||||| || || Sbjct 43387 TTCCTTCTCCGAGAGACTGATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGATC 43328 Query 94854 CTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 || ||| | || | ||||||||||||| | ||||| ||||| || || ||||||||| Sbjct 43327 TTT-TGCTTCCATCTTTTGGCTCAAGAAGAGGGGTCTGATGCCGGGACTGAGCTTCTCCA 43269 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 | ||||| ||||| || ||||| || || ||| || ||||| Sbjct 43268 ATGAGCTCATCTCCCGAGACGAAGGTCTTCACACCGACTTTGC 43226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257263981400