Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq233 149 2e-30 seq249 118 3e-21 seq275 116 1e-20 >seq233 Length=223772 Score = 149 bits (164), Expect = 2e-30 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | ||||| || ||| || ||||| || | Sbjct 211239 TTTGCATACCACCACGGAGACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGT 211298 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || ||||| |||||||| |||||||| || || |||||||||| Sbjct 211299 AGTCGGAAAGGGTGCGACCGTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGAT 211358 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| |||||||| || || || || || || || || ||||| | ||| | | Sbjct 211359 CAGGAGGAATGCCTTCTTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTATC-GCTA 211417 Query 140683 GT-TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || | || | ||||||||||| || ||||| ||||| |||||||| Sbjct 211418 CTCTCTACCTCCAAAGTGATCGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 >seq249 Length=106399 Score = 118 bits (130), Expect = 3e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 349204 AGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGA 349263 |||||||||| | || || || || ||||| |||||||| ||||||||||| || || || Sbjct 23515 AGGAATCGATCTCGGCACAACCTACTCTTGCGTTGCTGTCTGGCAAAATGACCGAGTGGA 23456 Query 349264 AATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAAC 349323 | ||||| ||||| || |||||| | || || || ||||||||||| || || || | Sbjct 23455 GGTCATTGCCAATGACCAGGGTAACCGCACCACTCCCTCATACGTTGCTTTCACAGACTC 23396 Query 349324 TGAGCGTATGATTGGTGATTCTGCAAAAAATCAAG 349358 ||||| |||| || ||| |||| || || |||| Sbjct 23395 GGAGCGATTGATCGGAGATGCTGCCAAGAACCAAG 23361 >seq275 Length=588737 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| |||||||| ||| || || || || || || || | || | ||||| Sbjct 39408 AGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCC 39349 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| |||||||| || |||||||||||||| || || || Sbjct 39348 TCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCT 39289 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || |||| || || | || || || | || | ||| Sbjct 39288 TGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTC 39229 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || ||||||||||| Sbjct 39228 TTACCCGTCAGGGTCTTGACGAAAATCTGCAT 39197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515244984114455