Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq318 302 5e-77 seq252 109 6e-19 >seq318 Length=903324 Score = 302 bits (334), Expect = 5e-77 Identities = 532/764 (70%), Gaps = 12/764 (2%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGG---TGACGACTACACGCGTGTCCGTGAGACGTAC 53251 |||||||||||| | || |||||||| ||||| | | | |||| |||||||||| Sbjct 23844 ATGCGCGTCGCCGTTGGCATCCACGGCGATGACGTCGATTC-CGTGAT--TGAGACGTAC 23900 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| | ||||||||||||| |||||| | || ||||| |||||||| || ||| Sbjct 23901 AACCTCATGTCCGAAAAGTACTTTACCCACGCCTCCCCGACCCTCTTCAACGCCGGCACG 23960 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 ||||||||| | ||| |||||||| || |||||||||||| ||||||||| Sbjct 23961 CCTCACCCTCAACTCTCGTCGTGCTTCCTCGTCTGCATGAAGGATGACAGCATCGACGGC 24020 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || |||||| ||| ||| || |||| | |||||||| || | Sbjct 24021 ATCTACGACACTCTCAAGACGTGCGCCATGATTAGCAAGACTGCCGGTGGTATAGGCCTG 24080 Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCA-CACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 | | ||| | || | | ||| | | || | ||| || || ||| | | | Sbjct 24081 AGCATCCACAACATTCGCGGCACCGGAAGCTACATTGCAGGC-ACCAATGGCTTTAGCAA 24139 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || ||||| || ||||| || |||||||||||||| || || ||||| |||| ||||| Sbjct 24140 CGGCATCGTCCCCATGCTGCGAGTCTTCAACAACACTGCACGCTACGTTGACCAAGGTGG 24199 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||| | || | || ||||||||| |||||| |||||| | |||||| | || Sbjct 24200 CAACAAGAGGCCTGGCGCCTTTGCCATCTACGCCGAGCCCTGGCACTCTGACATTTTCGA 24259 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TA 53669 ||| || || ||||| |||||| || | || || |||| || || ||||| || Sbjct 24260 GTTCCTGGACCTGCGCAAGAATCACGGAAAGGAGGAAGTGCGAGCACGCGAGCTGTTCTA 24319 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 | || |||||||| || |||||||||||| | || || || ||| |||||| | Sbjct 24320 C-GCGCTGTGGATCCCAGACCTCTTCATGAAGCGTGTCGAACAGAACGGCGAGTGGAGCT 24378 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 |||||||||| ||||||||||| ||| | | ||||| || ||||||||| | | | Sbjct 24379 TGATGTGCCCCAACGAGTGCCCTGGCATGGCCGAAGTCTATGGCGAGGAGTTTGAAGCGC 24438 Query 53790 TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 |||| | ||||| || |||| ||| |||| | ||||||||| || | | Sbjct 24439 TGTACGAAAAGTACGAAGCGGAGGGTCGCGCCAAGCGCACCATCAAGGCGCAAAAGCTGT 24498 Query 53850 GGGATGCAATCCT-CAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGAT 53908 || | || ||| | ||| | || | ||||| || | || | ||| ||||||||| Sbjct 24499 GGTACGCCATCTTGGAAGCG-CAAATCGAGACTGGCAACCCCTTTATGCTGTACAAGGAT 24557 Query 53909 TCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 ||| ||| |||||||||||||||||| | ||| |||||| Sbjct 24558 GCGGCGAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCAA 24601 Score = 150 bits (166), Expect = 2e-31 Identities = 537/819 (66%), Gaps = 54/819 (7%) Strand=Plus/Plus Query 55139 AACCTGAACCGGGTCATCGACAAGAATTACTA-CCCGACTGAAGCGGCGCGCAAGTCCAA 55197 ||||||||||| |||||||| || ||||| |||| | || | |||||| ||||| Sbjct 24759 AACCTGAACCGCATCATCGACGTCAACTACTATCCCGTC-GAGGAGGCGCGTCGTTCCAA 24817 Query 55198 CCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCT 55257 | |||| ||||| ||||||| |||||| || || || ||||||| |||||||| || Sbjct 24818 CTTCCGTCACCGTCCCATCGGCATCGGAGTGCAAGGTCTGGCCGATGCTTTCATGATCCT 24877 Query 55258 CGGATTGCCCTTCGACTCG---GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTC 55313 ||| || |||| |||||| ||| | || | || | ||| || | || ||| || | Sbjct 24878 CGGCATGGCCTTTGACTCGCCCGAAGC-GCGCAAGC--TCAACAAGCAAATTTTCGAGAC 24934 Query 55314 GCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACG 55373 ||||||| || || || ||| || || | || || |||| || ||||| Sbjct 24935 -CATCTACCACGCCGCACTGGAGCGCTCTTGCGAGCTTGCCCAACGCGACGGTCCCTACC 24993 Query 55374 AGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGT 55433 |||| | || | ||||| || ||||||| || |||| ||| | |||||| || Sbjct 24994 AGACCTACCAAGGCTCGCCCGCCTCCAAGGGAGAGCTGCAGTACGACATGTGGGGC--GT 25051 Query 55434 CTGACCCCATG----------TTTGACAA-GTTGAAGCATGACATTCACTTGTGGGGCCT 55482 | ||| || || ||| | | ||||| | ||| | | || || Sbjct 25052 CACACCTTCTGACTTGTGGGATTGGACCACGCTGAAGAGCAAGATTTCCGAGCACGGTCT 25111 Query 55483 ACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAA 55542 |||||||| ||||| | || || ||||| ||||| || || ||||||| | ||| Sbjct 25112 TCGCAACTCGCTGCTGCTCGCACCCATGCCTACCGCCTCCACCTCTCAGATTCTCGGCTT 25171 Query 55543 CAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGA 55602 |||||| || ||||| ||||| ||||||||||| ||| || || || || || Sbjct 25172 CAACGAATGCTTTGAGCCCTACACATCCAACATCTACACGCGTCGTGTGCTGGCCGGAGA 25231 Query 55603 GTTTGTCATGATCAACAAG------CACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656 ||| | ||||| | | | || || | |||| | || ||| Sbjct 25232 GTTCCAAGTTGTCAACCCGTGGTTGCTGCGCGAGCTGGTCGAGCAG--GGTCT----GTG 25285 Query 55657 GAACCCGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCT 55710 ||| | || || | || || |||| | | || || ||| |||| || || Sbjct 25286 GAATGAGGGCATGAAAAACCGCATCATTGCCC---ATGGCGGCTCCATCCAAAACGTTCC 25342 Query 55711 GGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG 55770 | || || | |||||| | | ||| |||||||||||||||| | || ||| Sbjct 25343 CGGCATACCCGACAGGATCAAGGCGCTCTACAAGACGGTGTGGGAGATTTCGCAAAAGTC 25402 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCA--GTCCCAGTCTCTGAAC 55828 | || || ||| ||| |||||||| || | |||| ||| ||| || || ||||| Sbjct 25403 GATCATCGAGATGGCTGCCGATCGTGGAGCATTCATCTGCCAAAGTCAAAG-CT-TGAAC 25460 Query 55829 ATCTTCATGGAGAATCCTTCAC---TGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGG 55885 || |||| |||| || ||| || | | | |||||||||||||||||| ||| Sbjct 25461 AT--TCATCTGCAATCGCCGACGTTTGGACA-GCTCACCTCGATGCACTTTTACGGCTGG 25517 Query 55886 AAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||||||||||||||||||| | |||||||||||| ||| Sbjct 25518 AAGAAGGGACTCAAGACGGGCACGTACTATCTGCGCACC 25556 >seq252 Length=544549 Score = 109 bits (120), Expect = 6e-19 Identities = 296/446 (66%), Gaps = 13/446 (3%) Strand=Plus/Plus Query 117136 AACGTAGCAGCTGAACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCAC 117195 |||| || |||| | || |||||||| || || | ||||| || || | | || || Sbjct 447142 AACGAAG-AGCTCCATCCCGTTCCGATGCCTTCGCCGCCATTGATGAGCACAAGAGGTAC 447200 Query 117196 GACAGGAACGTAGAACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCAC 117255 | |||| | ||| |||| ||||| | | | || || || ||| ||| ||||| | Sbjct 447201 GGCAGGCATGTACCACTCCGGCTCGATGCTCTGTCCATCATCATTGAGGTAATTGAGGAG 447260 Query 117256 CGCATTGTCACTCGGATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAG----TGAAAA 117311 | ||| ||||| ||| || | | || | |||||||| || |||||| Sbjct 447261 ATTGTCGTCGGCCGGATGGAAGATCTGTCTCGT----GATGCTAGGCAAGCTAGTGAAAA 447316 Query 117312 TGTAACGAGAGCTTGCAGCATCCTTGCCACC-AGCAAGACGCGTACCGAATTGTCCACTC 117370 | ||||||| || ||||| ||||| || | ||| | |||||||||||| || | Sbjct 447317 TATAACGAGCCGAGGCCGCATCTTTGCCTCCCATCAAT-CTCGTACCGAATTGACCGTTG 447375 Query 117371 GGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACA-AAGTTTTGAGCCAAGTTGACAATCGT 117429 ||| ||||||||| | |||||| || || || |||| ||| || | ||||| || Sbjct 447376 GGCGACAAGAGGTTGATGTTGTT-GCTACCGCAGAAGTCTTGGGCTAGACCAACAATGGT 447434 Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489 | | |||| ||| || || || || || | ||||| | || || || |||| Sbjct 447435 CATGTACATGCTCTGCTCTCCGTGATGGTAAGCAGAGTGCTCAGAAACATAACCACCCAG 447494 Query 117490 CTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCG 117549 ||| || ||||| || ||| | | || || ||||| ||| || | || || || || Sbjct 447495 CTGCGCTACCTTGATCTCTCCCTTGAGCTTGCGCTTGAAGCACCCAAACATGACTTTCCG 447554 Query 117550 CTGACTTGGCTTCAGACCATCCGCCA 117575 |||| ||||||||| || ||| ||| Sbjct 447555 TTGACCTGGCTTCAGTCCGTCCACCA 447580 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| ||||| ||||||||||| || ||||| || ||||| | ||| | ||||| Sbjct 449468 GTTGGCAAGCTTTGCACCGTATCCATTACGACCTCCCGTCACCTTGTCCTCATTGTCGTC 449527 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCT 119180 ||| |||||| |||||| || | ||||||||||||| Sbjct 449528 GTAATTGGAGGAGGTCAAGAGCTCGCCAAAGATGAGCT 449565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212682503000