Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq318 255 7e-63 seq233 156 5e-33 seq275 138 1e-27 seq221 138 1e-27 seq232 122 1e-22 >seq318 Length=903324 Score = 255 bits (282), Expect = 7e-63 Identities = 961/1477 (65%), Gaps = 73/1477 (5%) Strand=Plus/Minus Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064 || || | |||||| | ||||| | || || |||||||||||| ||||||||||| Sbjct 25588 ACGGTGAACTGAATGGCGTTGGCGGCAGGCCTGGTGCGCAGATAGTACGTGCCCGTCTTG 25529 Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124 || ||||||||||||||||| | |||||| || |||||| ||| || || | | Sbjct 25528 AGTCCCTTCTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGGCGATTGC 25469 Query 80125 ATGAAGA-TGTTCAGAGACTGAGACT--GACAGATGAAAGCCCCACGATCTGCCGCCATT 80181 | || || |||||| || || |||| | |||||||| || |||||||| || ||||| Sbjct 25468 A-GATGAATGTTCA-AG-CTTTGACTTTGGCAGATGAATGCTCCACGATCGGCAGCCATC 25412 Query 80182 TCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGATACA---CCTTACGAAGCTCC 80238 || || || |||||||| | ||| ||||| || || || | |||| || || Sbjct 25411 TCGATGATCGACTTTTGCGAAATCTCCCACACCGTCTTGTAGAGCGCCTT--GATCCTG- 25355 Query 80239 TCTGGAATGTCCAGA---TTTTGCACACTGCCACCGTCCTTTACAATTTGATTTTTCAAT 80295 || || ||| | || ||||| | ||| || | | || | ||||||| Sbjct 25354 TCGGGTATGCCGGGAACGTTTTGGATGGAGCCGCCATGGGCAATGATGCGGTTTTTCATG 25295 Query 80296 TCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCA-CAAGGT--GCTTGTTAATCATG 80352 | |||| | ||| ||| | ||| || || ||| | ||| || | || Sbjct 25294 CCCTCATTCCACAGACCCTGCTCGACCAGCTCGCGCAGCAACCACGGGTTGACAA-CTTG 25236 Query 80353 ACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCC 80412 |||||||| || || |||||| || | ||| | ||||| |||||||| Sbjct 25235 G--AACTCTCCGGCCAGCACACGACGCGTGTAGATGTTGGATGTGTAGGGCTCAAAGCAT 25178 Query 80413 TCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAA 80472 |||||| ||||| ||||||| ||| || || ||||| || ||| || ||| || Sbjct 25177 TCGTTGAAGCCGAGAATCTGAGAGGTGGAGGCGGTAGGCATGGGTGCGAGCAGCAGCGAG 25118 Query 80473 TTCCGCAGGCCGTGCT------TCTTGATATCCT-CGCG--CAAATCTGACCAAAAATCA 80523 || || || ||||||| ||||| | | | || | | |||| ||| || ||| Sbjct 25117 TTGCGAAGACCGTGCTCGGAAATCTTGCTCTTCAGCGTGGTCCAATC---CCACAAGTCA 25061 Query 80524 ACCCCAACGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACC 80581 | | |||||| |||||||||||| ||||| |||| || || || || | Sbjct 25060 G-----AAGGTGTGACGCCCCACATGTCGTACTGCAGCTCTCCCTTGGAGGCGGGCGAGC 25006 Query 80582 CCGCGAACGTCTCGTACGGGCCCTC-CGTCTTGGCCAGCTCACACGA---CTCCATAAGG 80637 | | | |||| ||| || || || ||| | ||| ||||| || || ||||| | Sbjct 25005 CTTGGTAGGTCTGGTAGGGACCGTCGCGT-TGGGCAAGCTCGCAAGAGCGCTCCA---GT 24950 Query 80638 GCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCG 80697 || ||||| || ||| ||| || | |||||| | |||||| | || ||| Sbjct 24949 GCGGCGTGGTAGATGGTCTCGAAAATTTGCTTGTTGAGCTTGCGCGCTTCGGGCGAGTCA 24890 Query 80698 AACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGG 80757 || | || ||| | |||||||| | || ||||| || || || |||||| |||| || Sbjct 24889 AAGGCCATGCCGAGGATCATGAAAGCATCGGCCAGACCTTGCACTCCGATGCCGATGGGA 24830 Query 80758 CGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACG 80817 ||||| || ||| || || |||||| | || || |||| ||||||| | Sbjct 24829 CGGTGACGGAAGTTGGAACGACGCGCCTCCTCGACGGGATAGTAGTTGACGTCGATGATG 24770 Query 80818 CGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGT----CGAA 80873 ||||||||||||| | ||| || || | |||||||||| ||||| ||| Sbjct 24769 CGGTTCAGGTTGCCACAGATGACCTTTGCGACGGCGTGAAGTTTCTTAAAGTTGTACGAC 24710 Query 80874 TTGGTTCCCCT-TC-ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACC 80931 ||||| | || | || | || ||| | ||| |||| ||||| ||||| ||| Sbjct 24709 TTGGTCGAAGTGTCGATGAACGATGGCAGGGCGATGGATGCCAAGTTGCAGACGGCAACC 24650 Query 80932 TCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCC 80991 || || | | | |||||| ||| || ||||||| ||| ||| || || ||| Sbjct 24649 TCGTCTGGCGCAGAGTACTCGATGATCTCGGTGCACAGGTTACTGCTCTTGATGGTGCCC 24590 Query 80992 AGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCG 81051 ||||| |||||||| |||| ||| || |||||||| ||| | ||| | || Sbjct 24589 AGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCCTTGTACAGCATAAAGGGGTTGCCA 24530 Query 81052 GTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGA----CCACCTT 81107 ||||||| || | | | |||||||| ||| | || ||||||||| | | | Sbjct 24529 GTCTCGATTTGCGCTTCCAAGATGGCGTACCACAGCTTTTGCGCCTTGATGGTGCGCTTG 24470 Query 81108 GCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAA 81166 ||| | || || || | ||||| |||| ||| | || |||| | || | | Sbjct 24469 GCGCGA----CCCTCCGCTTCGTACTTTTCGTACAGC-GCTTCAAACTCCTCGCCATAGA 24415 Query 81167 GTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTA 81226 ||| | | | | ||||||||||| |||||||||| | ||| ||| || | || | Sbjct 24414 CTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTCCACTCGCCGTTCTGTTCGA 24355 Query 81227 CAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCT 81286 || ||||||||| ||| |||||||| || ||| |||||| ||||| ||| | | Sbjct 24354 CACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAACAGCTCGCGTGCTCGCACTT 24295 Query 81287 CCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCT 81346 |||| | || || || ||||| || || || || | ||||| | ||||| |||| Sbjct 24294 CCTCCTTTCCGTGATTCTTGCGCAGGTCCAGGAACTCGAAAATGTCAGAGTGCCAGGGCT 24235 Query 81347 C----CAGAT--ACACGGCGATCGACCCCTTGCGACGGCCACCCTGGTTGACGTAACGGG 81400 | |||| | |||| | || |||| |||||| |||| ||||| || | Sbjct 24234 CGGCGTAGATGGCAAAGGCGCCAGGCCTCTTG---TTGCCACCTTGGTCAACGTAGCGTG 24178 Query 81401 CAGTCGCGTTAAATACACGCAACATAGGGATGATACC 81437 |||| ||| || || |||| ||| |||| ||| || Sbjct 24177 CAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCC 24141 >seq233 Length=223772 Score = 156 bits (172), Expect = 5e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || || || ||||| |||||| | ||||| ||| | Sbjct 211245 ATGCAAATTTTCGTGAAGACTCTCACTGGAAAGACGATTACTTTGGAGGTGGAGAGCAGC 211186 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| || ||||| ||||| ||||| || || || |||||| Sbjct 211185 GATACCATTGACAATGTCAAGGCAAAGATTCAAGACAAAGAGGGCATCCCACCCGACCAG 211126 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||| || ||||||||||| || | ||| || || | ||||| || Sbjct 211125 CAAAGGCTCATCTTTGCCGGCAAGCAACTCGAAGACGGTCGCACGCTTTCTGACTACAAC 211066 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| |||||| ||||||||| | || | ||||| |||||||| ||| Sbjct 211065 ATCCAGAAGGAAAGTACTCTTCATTTGGTGCTTCGTCTGCGCGGTGGTCAA 211015 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || ||||| ||||| || ||| | ||||| ||| | Sbjct 211473 ATGCAGATCTTTGTCAAAACCCTCACCGGAAAGACGATCACTTTGGAGGTAGAGAGTAGC 211414 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||||| || || || ||||| || || |||||||| || ||| Sbjct 211413 GATACCATTGACAACGTCAAGGCAAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 211354 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || ||||||||||| || |||||||| || | ||| ||||| | ||||| || Sbjct 211353 CAACGCCTCATTTTTGCTGGCAAACAACTCGAAGACGGTCGCACCCTTTCCGACTACAAC 211294 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||| ||||| | || | ||||| || ||||| Sbjct 211293 ATTCAGAAGGAGAGCACGCTTCACTTGGTGCTTCGTCTCCGTGGTGG 211247 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 27429 TACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGC 27488 ||| ||||||||||| |||||||| || ||||| ||| | || | || | || || Sbjct 212131 TACTGGCAAGACTATCACTCTTGAAGTCGAGTCCTCTGACACTATCGACAACGTCAAAGC 212072 Query 27489 TAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAA 27548 || || || ||||||||||| ||||| || ||||| || ||||| || || || || || Sbjct 212071 CAAGATCCAAGACAAGGAGGGTATTCCCCCTGACCAACAACGTCTCATCTTCGCAGGCAA 212012 Query 27549 GCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCA 27590 ||| ||||| || | || ||| | ||| ||||| || |||| Sbjct 212011 GCAGCTCGAAGACGGCCGCACCTTGAGC-GACTACAACATCCA 211970 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || || || ||||| ||| | ||| | || | || || Sbjct 211751 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCTTCTGACACCATCGACAACGTCAAAGCC 211692 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| ||||||||||| || || || ||||| || || || || ||||| ||||| Sbjct 211691 AAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAACGCCTCATCTTTGCCGGTAAA 211632 Query 27550 CAACTCGAGGATGATCGTAC 27569 || |||||||| | ||||| Sbjct 211631 CAGCTCGAGGACGGACGTAC 211612 >seq275 Length=588737 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || | ||||| ||||| Sbjct 39197 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCG 39256 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || || || |||||||||||||||||||| ||||| Sbjct 39257 GACACGATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCTCCTGACCAA 39316 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| ||||| |||||||||| | || || | ||||| || Sbjct 39317 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACTCTGTCCGACTACAAC 39376 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| ||||||||| || || Sbjct 39377 ATCCAGAAGGAGAGCACTCTTCACCTTGT 39405 >seq221 Length=819827 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | || |||||||| || || || ||||| ||| || | Sbjct 381970 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTGGAGGTCGAG--AGCT 382027 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | || | ||| | ||||| || || |||||||||||||| |||||||| || | Sbjct 382028 CGGACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATC 382087 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 | || | | || ||||| || ||||| || ||||||| | ||||| | ||||| | Sbjct 382088 AACAAAGATTGATCTTTGCGGGCAAGCAGCTGGAGGATGGAAGGACCCTGTCGGACTACA 382147 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || |||||||||||||| || || || |||||| | || || || Sbjct 382148 ACATTCAGAAGGAATCCACTCTCCACCTCGTGTTGCGTTTGCGTGGCGG 382196 Score = 102 bits (112), Expect = 9e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 || || || || || ||||| ||||| |||||||| ||||| |||||||| || ||||| Sbjct 381820 AAAGCCAAGATCCAAGACAAAGAGGGCATTCCTCCCGACCAACAGCGTCTGATCTTTGCC 381879 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||||| | || | | ||||| || |||| || ||| ||| Sbjct 381880 GGAAAGCAGCTCGAGGATGGCAGAACTTTGTCCGACTACAACATCCAGAAAGAAAGCACC 381939 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||| | ||||||||||| || Sbjct 381940 TTGCATCTCGTCCTTCGTCTTCGCGGAGG 381968 >seq232 Length=169745 Score = 122 bits (134), Expect = 1e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || |||||||| ||||| || | ||| | ||| | ||||| Sbjct 23936 ACGGGCAAGACGATCACCCTTGAGGTGGAGTCTTCGGACACCATCGACAATGTCAAGGCC 23995 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| ||||||||||||||||| || ||||| |||||||| || ||||| || ||| Sbjct 23996 AAGATTCAAGACAAGGAGGGAATTCCACCCGACCAACAGCGTCTGATCTTTGCAGGCAAG 24055 Query 27550 CAACTCGAGGATGATCGTAC 27569 ||||| ||||||| ||||| Sbjct 24056 CAACTGGAGGATGGACGTAC 24075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306942493200