Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq233 127 2e-24 seq221 95.1 1e-14 >seq233 Length=223772 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || ||||| ||| | || ||| | || || || | Sbjct 211473 ATGCAGATCTTTGTCAAAACCCTCACCGGAAAGACGATCACTTTGGAGGTAGAGAGTAGC 211414 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||| || ||||||||||||||||| || || ||||| Sbjct 211413 GATACCATTGACAACGTCAAGGCAAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 211354 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | || ||||||||| | |||||| || ||| ||||||| |||||| Sbjct 211353 CAACGCCTCATTTTTGCTGGCAAACAACTCGAAGACGGTCGCACCCTTTCCGACTACAAC 211294 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||| || | || ||||| | ||| | || ||||| || Sbjct 211293 ATTCAGAAGGAGAGCACGCTTCACTTGGTGCTTCGTCTCCGTGGTGGTAT 211244 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || || ||| | |||||| | || ||||| | Sbjct 211245 ATGCAAATTTTCGTGAAGACTCTCACTGGAAAGACGATTACTTTGGAGGTGGAGAGCAGC 211186 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||| |||||||||||||| ||||| |||||||| || Sbjct 211185 GATACCATTGACAATGTCAAGGCAAAGATTCAAGACAAAGAGGGCATCCCACCCGACCAG 211126 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||||| ||| | |||||| || || |||| || |||||| Sbjct 211125 CAAAGGCTCATCTTTGCCGGCAAGCAACTCGAAGACGGTCGCACGCTTTCTGACTACAAC 211066 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || | |||||||| | ||| |||| ||||| Sbjct 211065 ATCCAGAAGGAAAGTACTCTTCATTTGGTGCTTCGTCTGCGCGGTGG 211019 >seq221 Length=819827 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| |||||| | || || || || || || || Sbjct 381970 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTGGAGGTCGAGAGCTCG 382029 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || || || || ||||||||| Sbjct 382030 GACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 382089 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || ||||| || |||| || | |||| | || || |||||| Sbjct 382090 CAAAGATTGATCTTTGCGGGCAAGCAGCTGGAGGATGGAAGGACCCTGTCGGACTACAAC 382149 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||| || || | || | || ||||||||||| || || Sbjct 382150 ATTCAGAAGGAATCCACTCTCCACCTCGTGTTGCGTTTGCGTGGCGG 382196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915763307200