Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq233 105 5e-18 >seq233 Length=223772 Score = 105 bits (116), Expect = 5e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||| ||||| ||||| || ||||| | || || || |||| | Sbjct 211245 ATGCAAATTTTCGTGAAGACTCTCACTGGAAAGACGATTACTTTGGAGGTGGAGAGCAGC 211186 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| ||||| ||| || |||||||| || | || || | Sbjct 211185 GATACCATTGACAAT--GTCAAGGCAAAGATTCAAGACAAAGAGGGCATCCCACCCGACC 211128 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 ||||| || | || |||||||| || ||| | || |||| |||| |||| || || ||| Sbjct 211127 AGCAAAGGCTCATCTTTGCCGGCAAGCAACTCGAAGACGGTCGCACGCTT-TCTGACTAC 211069 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || || ||| | |||||||| | ||| |||| || || Sbjct 211068 AACATCCAGAAGGAAAGTACTCTTCATTTGGTGCTTCGTCTGCGCGGTGG 211019 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| || || || || || || | || || || || | | Sbjct 211473 ATGCAGATCTTTGTCAAAACCCTCACCGGAAAGACGATCACTTTGGAGGTAGAGAGTAGC 211414 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| ||||| ||| || ||||||||||| |||| || | Sbjct 211413 GATACCATTGACAAC--GTCAAGGCAAAGATCCAAGACAAAGAAGGCATTCCTCCTGATC 211356 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | |||||||| || |||||| | || |||| |||| | | ||||| |||| Sbjct 211355 AGCAACGCCTCATTTTTGCTGGCAAACAACTCGAAGACGGTCGCACCCTTTCCGACTACA 211296 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || |||||||| | || ||||| | ||| | ||||| || Sbjct 211295 ACATTCAGAAGGAGAGCACGCTTCACTTGGTGCTTCGTCTCCGTGGTGG 211247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355860296519595