Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq275 185 2e-41 seq221 174 4e-38 seq233 152 1e-31 seq232 120 7e-22 >seq275 Length=588737 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||||||| ||| || |||||||| || || | || ||||| ||||| Sbjct 39408 AGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCC 39349 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || ||||||||||||||||||| ||| |||||||| Sbjct 39348 TCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCT 39289 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||| ||||| || || ||||| | ||||| ||| Sbjct 39288 TGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTC 39229 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 39228 TTACCCGTCAGGGTCTTGACGAAAATCTGCAT 39197 >seq221 Length=819827 Score = 174 bits (192), Expect = 4e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||| |||||||| || || || ||||| || |||| |||||||||||||| ||| Sbjct 382178 ACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGGGTCCTTCCATCCTCC 382119 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| || ||||| | | |||||| || ||||||| || |||||||||||| Sbjct 382118 AGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGAATACCCTCCTTGTCCTGG 382059 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || || || ||||| ||||| ||||| || ||||| || ||||| ||||| Sbjct 382058 ATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTCTCGACCTCCAGCGTGATGGTCTTG 381999 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | ||||| ||||| | ||||| Sbjct 381998 CCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 >seq233 Length=223772 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||| ||| || || ||||| || || | |||||| | || ||| Sbjct 211262 AGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCT 211321 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| || || || |||||||| || |||||||||| ||||| ||||| Sbjct 211322 TCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCT 211381 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || ||||| || ||||| || || || ||||| | |||||||||| Sbjct 211382 TGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTC 211441 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || ||||| | |||||| Sbjct 211442 TTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 Score = 141 bits (156), Expect = 2e-28 Identities = 130/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 210930 TGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAG 210988 |||||||| || || | ||||| | | || ||||| |||||||||||||||||||| || Sbjct 211970 TGGATGTTGTAGTCGCTCAAGG-TGCGGCCGTCTTCGAGCTGCTTGCCTGCGAAGATGAG 212028 Query 210989 GCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048 |||||||||||||| |||| || |||||||| |||||||| ||| ||||| ||||| Sbjct 212029 ACGTTGTTGGTCAGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGAT 212088 Query 211049 GGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||||||| || || || |||||||| ||||| || || Sbjct 212089 AGTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTGCCAGT 212130 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| || || |||||||| || || | ||| || | || ||||| || ||| Sbjct 211043 TGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCGTCTTCGAGTTGC 211102 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| || | ||| ||||| || || | || || ||||| || |||||| Sbjct 211103 TTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGGGATGCCCTCTTTGTCTTGAATCTTT 211162 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || ||||| || ||| || ||||| | ||| ||||||||||| ||| Sbjct 211163 GCCTTGACATTGTCAATGGTATCGCTGCTCTCCACCTCCAAAGTAATCGTCTTTCCAGTG 211222 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || | ||||| Sbjct 211223 AGAGTCTTCACGAAAATTTGCAT 211245 Score = 113 bits (124), Expect = 1e-19 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 210934 TGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTT 210993 || || ||| | || | || | ||| || || ||||| || || || ||||| ||||||| Sbjct 211595 TGCTACAATACTCACGCGTACGTCCGTCCTCGAGCTGTTTACCGGCAAAGATGAGGCGTT 211654 Query 210994 GTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGT 211053 |||||||||| || | || |||||||| || ||||| ||| ||||| |||||||||| Sbjct 211655 GTTGGTCAGGTGGGATGCCCTCCTTGTCTTGAATCTTGGCTTTGACGTTGTCGATGGTGT 211714 Query 211054 CAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||| || || ||||| ||||| ||||| || || Sbjct 211715 CAGAAGACTCGACTTCGAGGGTGATGGTCTTGCCGGT 211751 >seq232 Length=169745 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||| ||||| ||||||||||| ||||| || || |||||||| || |||| ||| || Sbjct 24070 TCCATCCTCCAGTTGCTTGCCTGCAAAGATCAGACGCTGTTGGTCGGGTGGAATTCCCTC 24011 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||| || ||||| || || || ||||||||||| || || ||||| || || Sbjct 24010 CTTGTCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGT 23951 Query 211076 GATCGTCTTTCCCGTG 211091 ||||||||| |||||| Sbjct 23950 GATCGTCTTGCCCGTG 23935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159144796957025