Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq233 98.7 7e-16 >seq233 Length=223772 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| ||||| ||||||||| | || || || | Sbjct 211473 ATGCAGATCTTTGTCAAAACCCTCACCGGAAAGACGATCACTTTGGAGGTAGAGAGTAGC 211414 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||| || ||||||||||| | || || ||||| Sbjct 211413 GATACCATTGACAACGTCAAGGCAAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 211354 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||| ||||||||||| ||||||| ||||| | ||| |||||| Sbjct 211353 CAACGCCTCATTTTTGCTGGCAAACAACTCGAAGACGGTCGCACCCTTTCCGACTACAAC 211294 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 211293 ATTCAGAAGGAG 211282 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || ||||| ||||| ||||| ||| | || || || || Sbjct 211245 ATGCAAATTTTCGTGAAGACTCTCACTGGAAAGACGATTACTTTGGAGGTGGAGAGCAGC 211186 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || |||| | || |||||||| || | || || || || Sbjct 211185 GATACCATTGACAATGTCAAGGCAAAGA-TTCAAGACAAAGAGGGCATCCCACCCGACCA 211127 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||||||||| ||||| ||||||| ||||| | || ||||| Sbjct 211126 GCAAAGGCTCATCTTTGCCGGCAAGCAACTCGAAGACGGTCGCACGCTTTCTGACTACAA 211067 Query 23790 CATACAAAAAGA 23801 ||| || || || Sbjct 211066 CATCCAGAAGGA 211055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007602046380