Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq275 167 6e-36 seq221 156 1e-32 seq484 120 7e-22 seq233 120 7e-22 seq232 116 9e-21 >seq275 Length=588737 Score = 167 bits (184), Expect = 6e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| |||||| || || |||| ||||| |||| || ||| || ||||| Sbjct 39408 AGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCC 39349 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || ||||||||||| || ||||| || ||||||||| Sbjct 39348 TCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCT 39289 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||| ||||| || | || || || || ||||| ||| Sbjct 39288 TGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTC 39229 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||||| || || | ||| | ||||| Sbjct 39228 TTACCCGTCAGGGTCTTGACGAAAATCTGCAT 39197 >seq221 Length=819827 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || ||||||||||||||||| || || | ||||| || | || || || ||||| || Sbjct 382178 ACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGGGTCCTTCCATCCTCC 382119 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 |||||||| || || ||||| | || |||||| ||||| |||||||| |||||||| ||| Sbjct 382118 AGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGAATACCCTCCTTGTCCTGG 382059 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| ||| ||| ||||| ||||| ||| | || || || | |||||| |||||| Sbjct 382058 ATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTCTCGACCTCCAGCGTGATGGTCTTG 381999 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || | || | |||||| Sbjct 381998 CCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| || || | ||| |||||| |||| ||||| |||| ||||||| Sbjct 381962 CGAAGACGAAGGACGAGATGCAAGGTGCTTTCTTTCTGGATGTTGTAGTCGGACAAAGTT 381903 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || ||||| || |||||||| || || ||||| || || ||||||||||| ||||| || Sbjct 381902 CTGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCGGGAGGAATGCCC 381843 Query 225613 TCCTTGTCTTGGATCTT 225629 || |||||||||||||| Sbjct 381842 TCTTTGTCTTGGATCTT 381826 >seq484 Length=25672 Score = 120 bits (132), Expect = 7e-22 Identities = 198/282 (70%), Gaps = 3/282 (1%) Strand=Plus/Plus Query 7447 TATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGG 7506 ||| | || |||| | ||| | | ||| || ||||| || |||||| |||| | Sbjct 18109 TATCTTATCTTTGCCGTGTTTGCAGCTATAATTGGTACAGCTTTCTCTATGCTTATTCGT 18168 Query 7507 TTAGAATTAGCTGCTCCGGGTTCTCAAATAT-TGAGTGGTAATAGCCAACTTTACAACGT 7565 ||||| | |||| || ||| ||| ||| | | ||| || ||| || || Sbjct 18169 ATAGAACTTACTGCACCTGGTGTACAA-TATCTTAATGGAGATCATCAAACCTATAATAC 18227 Query 7566 TATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGG 7625 ||||||||| || |||||||||||||| || |||||| | |||||||| | |||| |||| Sbjct 18228 TATTATTACAGCACATGCCTTTGTTATAATCTTCTTTATAGTTATGCCTGCTATGGTAGG 18287 Query 7626 CGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAG 7685 || || || |||| | || ||| | || |||| || ||||||| || || ||| | Sbjct 18288 TGGCTTTGGTAATTACCTTGTACCTGTTATAGTTGGAGCCGCTGATATAGCCTTCCCACG 18347 Query 7686 GCTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTTAT 7726 ||||| ||||| ||||| || |||| || ||||| ||||| Sbjct 18348 ACTTAATAATATTAGTTTCTGGCTACTTCCACCTTCACTTAT 18389 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 371367 TGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTT 371426 ||||| ||||| | | || |||||| | ||||||| || |||||||||||||| Sbjct 18606 TGGTAGCTTATGTAGTGTTATACCAGGGTTACGTATATTAAGTACTGTAGTAATAAAGTT 18547 Query 371427 TATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGAC 371486 |||||| ||||| | |||| |||||||| || |||| |||||| || |||| || || Sbjct 18546 TATAGCTCCTAGCATAGAACTAATACCTGCTAGGTGTAGACTAAAGATAGCTAGGTCTAC 18487 Query 371487 GGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGT 371543 || || || || || | || | ||| | || || || |||||||| || || Sbjct 18486 TGATCCTCCAGAATGGCTTTGAAGTGTACTAAGAGGTGGATATACTGTTCAACCTGT 18430 >seq233 Length=223772 Score = 120 bits (132), Expect = 7e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 225529 TGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGT 225588 |||| ||||| ||| ||| || | || ||||| |||||||| || |||||||| || Sbjct 211970 TGGATGTTGTAGTCGCTCAAGGTGCGGCCGTCTTCGAGCTGCTTGCCTGCGAAGATGAGA 212029 Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 ||||||||||| || |||||||| ||||||||||||||||| || || ||||| Sbjct 212030 CGTTGTTGGTCAGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGATA 212089 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||| |||| || || || | ||||| |||||||| || Sbjct 212090 GTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTGCCAGT 212130 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||| || || || | ||||| |||| | || | || ||| Sbjct 211262 AGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCT 211321 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| || || || ||||| || || || ||||| ||||| |||||| Sbjct 211322 TCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCT 211381 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| || || ||||| || | || || || || ||||||||| Sbjct 211382 TGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTC 211441 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || || | ||||| Sbjct 211442 TTTCCGGTGAGGGTTTT 211458 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || ||||| || || || ||||| || ||||||||||| || || || || ||| Sbjct 211618 CCGTCCTCGAGCTGTTTACCGGCAAAGATGAGGCGTTGTTGGTCAGGTGGGATGCCCTCC 211677 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| ||||| || || ||||||||||| || | || || || | ||| Sbjct 211678 TTGTCTTGAATCTTGGCTTTGACGTTGTCGATGGTGTCAGAAGACTCGACTTCGAGGGTG 211737 Query 225676 ATCGTCTTGCCCGTC 225690 || |||||||| ||| Sbjct 211738 ATGGTCTTGCCGGTC 211752 >seq232 Length=169745 Score = 116 bits (128), Expect = 9e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || || ||||| || || ||||| || || ||||||||||| ||||| || ||| Sbjct 24069 CCATCCTCCAGTTGCTTGCCTGCAAAGATCAGACGCTGTTGGTCGGGTGGAATTCCCTCC 24010 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| ||||| ||| ||| ||||||||||| || | ||||| || | ||| Sbjct 24009 TTGTCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTG 23950 Query 225676 ATCGTCTTGCCCGT 225689 |||||||||||||| Sbjct 23949 ATCGTCTTGCCCGT 23936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192523789536590