Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq233 129 5e-25 >seq233 Length=223772 Score = 129 bits (142), Expect = 5e-25 Identities = 353/531 (66%), Gaps = 15/531 (3%) Strand=Plus/Plus Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627 ||||||||||| | || || || || || || | | ||| ||||| | ||| ||||| Sbjct 43243 ACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAGTCCCGGCATCAGACCCCTCTT 43302 Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 || |||||||| || | ||||| || || || ||||| ||||| || ||||||||||| Sbjct 43303 CTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAAGAAGATGCCCTCGACGGCGGCAAA 43362 Query 4688 CGCTACTAATC---GGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCC 4743 || | | || ||| ||| | || | | | |||| ||||| | | ||||| Sbjct 43363 GGCGATCAGTCTCTCGGA---GAAGGAAGATCG-TCTGTCGGAGATCCACCTGAGTGCCC 43418 Query 4744 AGTTAGCTTTTTTCTTAACGCAC-GGAATTGTGTATATAGCGTTAAATAATTTACT-TTT 4801 ||| ||| |||| ||| || ||| ||||| || | | || | ||| || ||| | | Sbjct 43419 AGTCAGCCTTTTGCTTGAC-CACGGGAATCGTCTCGACGGCATCAAACAA-GAACTCTCT 43476 Query 4802 TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATT 4861 | ||| || | ||||||||||| || || || || | || || || || || Sbjct 43477 CTGCTCTGGTTCGCGGATATAAGTGTCGATGAGCAGAGAGTAAGTCTCCGAGTGAATGTT 43536 Query 4862 TTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACA 4921 || || || || || |||||||||||||| || |||| | |||| || || | | Sbjct 43537 CTCCATCATGATTTGGAAACCGTAAAAGCATCTGGCCTCTGCTGCTTGCACCTCTTGCGA 43596 Query 4922 AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAAC 4981 |||| || || ||||| || || || || ||||| |||||||| || || | || Sbjct 43597 GAATCGCTCCACCAAGTTCTCATTCACGATGCCGTCCGAAGCTGCAAAGAAGGCGAGCAC 43656 Query 4982 ATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT---CCAGTGGGGCAAATCTTT 5038 ||||| | ||||| | || | || || || || ||| | ||| || || Sbjct 43657 GTGAGAGACAAAGTGCCTCTCATTGTCGTTGAGCTTGTTGTCCCAATCATGCAGGTCCTT 43716 Query 5039 AGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 | | ||| | |||||| | |||||||| || || || || || ||||| Sbjct 43717 GCTGAGATCGATTTCTTCTGCGGTCCAAAAAGATGCCTCTGCCTTCTTGTA 43767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047075736505