Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq318 140 5e-28 seq233 118 1e-21 >seq318 Length=903324 Score = 140 bits (154), Expect = 5e-28 Identities = 519/809 (64%), Gaps = 6/809 (1%) Strand=Plus/Minus Query 77730 ATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTT 77789 || |||||||| || || ||||| | ||||| |||||||| || | ||||||||||| Sbjct 24628 ATGATCTCGGTGCACAGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTG 24569 Query 77790 TTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATA 77849 || | ||||| || || ||||| || | || || || || || | ||| | Sbjct 24568 CGGTTCGCCGCATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAG 24509 Query 77850 ATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATAT 77909 || | | ||| | | || || || | ||| || | ||| ||| || Sbjct 24508 ATGGCGTACCACAGCTTTTGCGCCTTGATGGTGCGCTTGGCGCGACCCTCCGCTTCGTAC 24449 Query 77910 TGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTT 77969 | || ||| |||||| || || || | || || ||| |||||||| || || Sbjct 24448 TTTTCGTACAGCGCTTCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTG 24389 Query 77970 GGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATC 78029 ||||||||||| ||| || || | | | || || ||||| ||||| || || ||| Sbjct 24388 GGGCACATCAAGCTCCACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATC 24329 Query 78030 CATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGA 78089 || || || || || || || | || ||| || ||||| |||||| || Sbjct 24328 CACAGCGCGTAGAACAGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCAGG 24269 Query 78090 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGT 78149 || || ||||| | ||| ||||| ||||| || || || || || | | ||||| Sbjct 24268 TCCAGGAACTCGAAAATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGC 24209 Query 78150 CGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGA 78209 | || || || || || || | || | || ||||| || | |||| || ||| || Sbjct 24208 CTCTTGTTGCCACCTTGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGG 24149 Query 78210 ATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTA 78269 | || ||||| ||||| || || | ||| || ||||| | ||||||| || Sbjct 24148 ACGATGCCGTTGCTAAAGCCATTGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTG 24089 Query 78270 CTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT-TTCAATGT 78328 ||| | ||||| || || || |||| || | |||| |||| || | || Sbjct 24088 TGGATGCTCAGGCCTATACCACCGGCAGTCTTGCTAATCATGGCGC-ACGTCTTGAGAGT 24030 Query 78329 ATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTG 78388 |||||||| || || || ||||||||| ||||| | || || || || | ||| Sbjct 24029 GTCGTAGATGCCGTCGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTG 23970 Query 78389 ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA 78448 | | ||| || || || || || | ||||| || || || ||||| | ||||| || Sbjct 23969 AGGGTGAGGCGTGCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGA 23910 Query 78449 AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTG--ATGAATTCCTACCGCT 78506 | || ||||| || ||||| | || || | || ||| | || || || || || Sbjct 23909 CATGAGGTTGTACGTCTCAATCACGGAATCGACGT--CATCGCCGTGGATGCCAACGGCG 23852 Query 78507 ACACGCATCAACATATGCTGAGGTCTTTC 78535 || ||||| | ||| |||||||| | ||| Sbjct 23851 ACGCGCATAATCATGTGCTGAGGACGTTC 23823 >seq233 Length=223772 Score = 118 bits (130), Expect = 1e-21 Identities = 351/535 (66%), Gaps = 16/535 (3%) Strand=Plus/Plus Query 48156 TGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCA 48215 ||||||||||| |||| || | || || || || | || || ||||| || || Sbjct 43238 TGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAGTCCCGGCATCAGACCC 43297 Query 48216 CGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCC 48275 | || ||||||||||| || | || |||||||| || ||||| ||||| || ||||| Sbjct 43298 CTCTTCTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAAGAAGATGCCCTCGACGGCG 43357 Query 48276 GCAAATGCGGTAAGTCTCTCTCCGTA--ACTGGCTTC-GTTGTGTATCCACCGTTGTGCC 48332 ||||| ||| | |||||||| | | | | || || | ||||||| ||||| Sbjct 43358 GCAAAGGCGATCAGTCTCTCGGAGAAGGAAGATCGTCTGTCGGAGATCCACCTGAGTGCC 43417 Query 48333 CAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttt 48392 || |||||||| | ||| || || || || || | |||| ||| | || | Sbjct 43418 CAGTCAGCCTTTTGCTTGACCACGGGAATCGTCTCGACGGCATCAAACAAGAA----CTC 43473 Query 48393 tCATTGCTATCTTTAACG----TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448 || |||| | || || ||||| || || | ||| || | || |||||||| Sbjct 43474 TCTCTGCTCTGGTTCGCGGATATAAGTGTCGATGAGCAGAGAGTAAGTCTCCGAGTGAAT 43533 Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG-TGATCTGTACCTCCG 48507 || || || || || || |||||||| ||||| || |||| || | || ||||| Sbjct 43534 GTTCTCCATCATGATTTGGAAACCGTAAAAGCATCTGGCCTCTGCTGCT-TGCACCTCTT 43592 Query 48508 TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTA 48567 | ||||| || |||| |||||||| || || || || ||| ||||| || || | Sbjct 43593 GCGAGAATCGCTCCACCAAGTTCTCATTCACGATGCCGTCCGAAGCTGCAAAGAAGGCGA 43652 Query 48568 ATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT---CCAGTCATTGATAT 48624 || || | ||| | | || ||| | || || || ||| |||| | | Sbjct 43653 GCACGTGAGAGACAAAGTGCCTCTCATTGTCGTTGAGCTTGTTGTCCCAATCATGCAGGT 43712 Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679 | || | ||| | |||||| || |||||||| ||||||||||| || || || Sbjct 43713 CCTTGCTGAGATCGATTTCTTCTGCGGTCCAAAAAGATGCCTCTGCCTTCTTGTA 43767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664588570400