Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq275 181 2e-40 seq233 163 6e-35 seq221 158 3e-33 seq232 131 4e-25 seq254 100 6e-16 >seq275 Length=588737 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 282885 CGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCA 282944 || || || || || | ||||| || || |||||||||||||| | || || | |||| Sbjct 39411 CGGAGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCA 39352 Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 ||||| || || || || || ||||| | ||||||||||||| ||||| ||||||||| Sbjct 39351 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTG 39292 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||||||||| || || || | ||||| |||||||||| ||||| || | ||||| Sbjct 39291 TCTTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATG 39232 Query 283065 GTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||||| ||||| ||||| |||||||| Sbjct 39231 GTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 39197 >seq233 Length=223772 Score = 163 bits (180), Expect = 6e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| ||||| |||| ||| | || ||||| || |||||||||||||||| Sbjct 211018 ACCACCGCGCAGACGAAGCACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGA 211077 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||| || || || ||||| || ||||||||||| | | ||| ||||| || Sbjct 211078 AAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGG 211137 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 || ||||| |||||||| |||||||| || || | || || || | || ||| || | Sbjct 211138 GATGCCCTCTTTGTCTTGAATCTTTGCCTTGACATTGTCAATGGTAT-CGCTGCTCTCCA 211196 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | ||| |||||||| || || | |||||| ||||| || ||||| Sbjct 211197 CCTCCAAAGTAATCGTCTTTCCAGTGAGAGTCTTCACGAAAATTTGCAT 211245 Score = 154 bits (170), Expect = 3e-32 Identities = 133/162 (82%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 282915 TGGATGTTGTAGTC-AGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAA 282973 |||||||||||||| |||| |||||||| || || || || || || || ||||| | Sbjct 211970 TGGATGTTGTAGTCGCTCAAG-GTGCGGCCGTCTTCGAGCTGCTTGCCTGCGAAGATGAG 212028 Query 282974 ACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGAT 283033 ||||||||||||| |||||||||||||||||||||||||| ||||| ||| | ||||| Sbjct 212029 ACGTTGTTGGTCAGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGAT 212088 Query 283034 AGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 |||||| || | |||||||| |||||||| ||||| || || Sbjct 212089 AGTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTGCCAGT 212130 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| || | |||||| || || || ||||||||||| | Sbjct 211246 ACCACCACGGAGACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGA 211305 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || || || |||||||| || ||||| || | ||||| || ||| || Sbjct 211306 AAGGGTGCGACCGTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGG 211365 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || ||||||||||||||||| || ||| | || || || || | || || Sbjct 211366 AATGCCTTCTTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTAC 211425 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||||||||| || || | || || || || |||||||| Sbjct 211426 CTCCAAAGTGATCGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 Score = 138 bits (152), Expect = 2e-27 Identities = 118/146 (81%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || |||| || || ||||| || ||||| ||||||||||| | |||||||||||| | Sbjct 211607 CACGCGTACGTCCGTCCTCGAGCTGTTTACCGGCAAAGATGAGGCGTTGTTGGTCAGGTG 211666 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || |||||||||||||| ||||| ||||| ||| | ||||| ||||| |||| |||| Sbjct 211667 GGATGCCCTCCTTGTCTTGAATCTTGGCTTTGACGTTGTCGATGGTGTCAGAAGACTCGA 211726 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||||| ||||| ||||| || ||| Sbjct 211727 CTTCGAGGGTGATGGTCTTGCCGGTC 211752 >seq221 Length=819827 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||||| || | || || || | ||| ||| || || ||||||||||| | Sbjct 382197 ACCGCCACGCAAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGA 382138 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | |||||||| || || || || ||||||||||| | |||||| || || Sbjct 382137 CAGGGTCCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGG 382078 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 ||||||||||||||| |||||||| || || || | ||||||||||||| |||| |||| Sbjct 382077 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCG-AGCTCTCGA 382019 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||||| || ||||| ||||| || || || ||||| Sbjct 382018 CCTCCAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 Score = 141 bits (156), Expect = 2e-28 Identities = 123/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || ||||| || ||||| || ||||||||||| |||||||||||||| | Sbjct 381969 ACCTCCGCGAAGACGAAGGACGAGATGCAAGGTGCTTTCTTTCTGGATGTTGTAGTCGGA 381910 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | ||||||||| || || || ||||||||||||| ||| |||||||| || Sbjct 381909 CAAAGTTCTGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCGGGAGG 381850 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 ||| ||||| |||||||||||||| ||||| || Sbjct 381849 AATGCCCTCTTTGTCTTGGATCTTGGCTTTGAC 381817 >seq232 Length=169745 Score = 131 bits (144), Expect = 4e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || |||| || |||||||| ||||| || || |||||||||| ||| |||||||| | Sbjct 24080 CACGCGTACGTCCATCCTCCAGTTGCTTGCCTGCAAAGATCAGACGCTGTTGGTCGGGTG 24021 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| |||||||||||||| ||||| || || || | ||||| |||||||||| || | Sbjct 24020 GAATTCCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCA 23961 Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075 | || || ||||||||||| ||||| Sbjct 23960 CCTCAAGGGTGATCGTCTTGCCCGT 23936 >seq254 Length=1514893 Score = 100 bits (110), Expect = 6e-16 Identities = 178/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 316948 ATGAAGTCAACGATAGACGTGTTAGATTCGGATCCGTCGAGGTCATGCTCAACATATGCA 317007 |||||||||| || || ||| | || ||||||||||| || |||||||| || || Sbjct 597344 ATGAAGTCAAGAATGGAGATGTCACCCTCAGATCCGTCGAGATCGTGCTCAACGTAC-CA 597286 Query 317008 GTTTTCAGAATATCCTTCGTCG---GGAACCCTTCCAACTGACCGTTCACAATCGCCCTC 317064 | | | | |||| | | |||| || || | |||||||||| || || | | Sbjct 597285 GGTGC--GGACCTCCTCGGGAGAAGGGAAACCCTCAACCTGACCGTTCTGGATGGCACGC 597228 Query 317065 ATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTC 317124 |||| || |||||||||| || || |||||||||||||||| || | | |||| Sbjct 597227 ATCAAGGTGGACTTGCCAGATCCGTTACGGCCGCAAAGACCATAGCGGTGGGCACGCTTC 597168 Query 317125 AGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAA 317184 | | || || | |||| || || ||||| |||| ||||| |||||||| | ||| Sbjct 597167 AAACGCAAGGTGGCGGTGTTGAGCAGGATCTTGGCACCGTATGCGAGAGAGAATTGACAG 597108 Query 317185 TCACACAGGTCCTCGCC 317201 | || ||||| ||||| Sbjct 597107 TTGCAAAGGTCTTCGCC 597091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046732695497190