Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq275 118 8e-22 seq233 116 3e-21 seq221 114 9e-21 >seq275 Length=588737 Score = 118 bits (130), Expect = 8e-22 Identities = 164/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| |||||||| ||||||||||| ||||||||||| |||| || | | || || Sbjct 39406 CACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTC 39347 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | ||| || || || | ||| | || ||||| || Sbjct 39346 GAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTG 39287 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | || ||||| | || || ||||||| || || ||||| Sbjct 39286 GATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTT 39227 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT---GAATGAAAATA 44353 ||||| |||||||| ||||| || |||||| ||| ||| | ||||| Sbjct 39226 ACCCGTCAGGGTCTTGACGAAAATCTGCATGCTGTTCCGAAAGCAAATA 39178 >seq233 Length=223772 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||||| || || ||||| ||||||||||| || | || ||| |||| || Sbjct 211036 CACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCGTCTTC 211095 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||||||||| | | ||||| || | || | || || || || Sbjct 211096 GAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGGGATGCCCTCTTTGTCTTG 211155 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | ||||| ||| | |||||||||| ||||||||| Sbjct 211156 AATCTTTGCCTTGACATTGT--CAATGGTATCGCTGCTCTCCACCTCCAAAGTAATCGTC 211213 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| ||||||||||| |||||||| Sbjct 211214 TTTCCAGTGAGAGTCTTCACGAAAATTTGCAT 211245 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||||||||||||||| || |||||||| |||| || ||| |||| || Sbjct 211264 CACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCTTC 211323 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || || ||||| || | || |||||||| | ||| | ||||| || || Sbjct 211324 GAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCTTG 211383 Query 44248 TATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | | ||| | ||||| ||| || ||||||| || ||||||| Sbjct 211384 GATCTT-TGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTCT 211442 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| |||||||| || || ||||| ||||| Sbjct 211443 TTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 >seq221 Length=819827 Score = 114 bits (126), Expect = 9e-21 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CG 44182 |||||| ||||| || ||| ||||| || |||||||| || | || || || | Sbjct 382182 CAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAG--GGTCCTTCCA 382125 Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||||||||| || ||||||||||| | || ||||| | ||| | ||| ||||| Sbjct 382124 TCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGAATACCCTCCTTG 382065 Query 44243 TCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 ||| ||||| ||| || ||| | || ||||| | | || ||||||| ||| | Sbjct 382064 TCCTGGATCTTGGCCTTGACATTGT--CGATAGTGTCCGAGCTCTCGACCTCCAGCGTGA 382007 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| || || | ||||||||| ||||||||||| Sbjct 382006 TGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988272119245