Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq233 152 1e-31 seq221 131 4e-25 seq232 102 2e-16 >seq233 Length=223772 Score = 152 bits (168), Expect = 1e-31 Identities = 147/189 (78%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| |||||||| ||||| ||||| || | |||||||| ||| || Sbjct 211242 CAAATTTTCGTGAAGACTCTCACTGGAAAGACGATTACTTTGGAGGTGGAGAGCAGCGAT 211183 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||||||| |||||||| || ||||| || ||||||||| Sbjct 211182 ACCATTGACAATGTCAAGGCAAAGATTCAAGACAAAGAGGGCATCCCACCCGACCAGCAA 211123 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| || || |||||||| || | || ||| | || || ||| || Sbjct 211122 AGGCTCATCTTTGCCGGCAAGCAACTCGAAGACGGTCGCACGCTTTCTGACTACAACATC 211063 Query 178104 CAAAAAGAA 178112 || || ||| Sbjct 211062 CAGAAGGAA 211054 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| ||||| ||||| |||||||| | ||||| || || || Sbjct 211470 CAGATCTTTGTCAAAACCCTCACCGGAAAGACGATCACTTTGGAGGTAGAGAGTAGCGAT 211411 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||| || ||||||||||| || ||||| || |||||| Sbjct 211410 ACCATTGACAACGTCAAGGCAAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAGCAA 211351 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || ||||| |||||||| || | || ||| |||| || ||| | Sbjct 211350 CGCCTCATTTTTGCTGGCAAACAACTCGAAGACGGTCGCACCCTTTCCGACTACAACATT 211291 Query 178104 CAAAAAGA 178111 || || || Sbjct 211290 CAGAAGGA 211283 Score = 118 bits (130), Expect = 3e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||||||||| || || || ||||||||||| ||||||||| Sbjct 211751 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCTTCTGACACCATCGACAACGTCAAAGCC 211692 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| ||||| || || ||||| || ||||| ||||| || ||||| ||||| ||| Sbjct 211691 AAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAACGCCTCATCTTTGCCGGTAAA 211632 Query 178065 CAGCTCGAAGATGGA 178079 |||||||| || ||| Sbjct 211631 CAGCTCGAGGACGGA 211617 Score = 100 bits (110), Expect = 7e-16 Identities = 121/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| || || || || ||| ||||| ||||| ||||||||| Sbjct 212130 ACTGGCAAGACTATCACTCTTGAAGTCGAGTCCTCTGACACTATCGACAACGTCAAAGCC 212071 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| || || || || || ||||| ||||| || |||||||| || || Sbjct 212070 AAGATCCAAGACAAGGAGGGTATTCCCCCTGACCAACAACGTCTCATCTTCGCAGGCAAG 212011 Query 178065 CAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCA 178105 ||||||||||| || | || |||| ||| || ||| |||| Sbjct 212010 CAGCTCGAAGACGGCCGCAC-CTTGAGCGACTACAACATCCA 211970 >seq221 Length=819827 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || | || || || || ||||| || ||||| || ||||| ||| Sbjct 381973 CAAATCTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTGGAGGTCGAGAGCTCGGAC 382032 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| |||||||| || || || ||||| || || ||| Sbjct 382033 ACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAACAA 382092 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || ||||| || ||||||||||| || | || || ||| | Sbjct 382093 AGATTGATCTTTGCGGGCAAGCAGCTGGAGGATGGAAGGACCCTGTCGGACTACAACATT 382152 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || ||||| || || || || || ||| Sbjct 382153 CAGAAGGAATCCACTCTCCACCTCGTGTTG 382182 >seq232 Length=169745 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 177944 CACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACA 178003 ||| || || ||||||||||| |||||||| || ||||||||||| || ||||| Sbjct 23935 CACGGGCAAGACGATCACCCTTGAGGTGGAGTCTTCGGACACCATCGACAATGTCAAGGC 23994 Query 178004 AAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 |||||||| ||||| || ||||| || || ||||| || || || ||||| || || || Sbjct 23995 CAAGATTCAAGACAAGGAGGGAATTCCACCCGACCAACAGCGTCTGATCTTTGCAGGCAA 24054 Query 178064 ACAGCTCGAAGATGGA 178079 || || || |||||| Sbjct 24055 GCAACTGGAGGATGGA 24070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723719939090