Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq275 141 9e-29 seq233 134 1e-26 seq221 104 2e-17 >seq275 Length=588737 Score = 141 bits (156), Expect = 9e-29 Identities = 160/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || || || |||||||||||||| ||||| |||||||| || || | | || || Sbjct 39406 CACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTC 39347 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||| ||||| || || || |||||||| | |||| | ||||||||| Sbjct 39346 GAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTG 39287 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||| || |||| || | | | ||||| ||||| ||||||| || || || | Sbjct 39286 GATCTTGGCCTTC-ACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCT 39228 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||||| ||||| ||||||||||||||| Sbjct 39227 TACCCGTCAGGGTCTTGACGAAAATCTGCATG 39196 >seq233 Length=223772 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||| ||| || || || |||||||| ||||| ||||| || Sbjct 211019 CCACCGCGCAGACGAAGCACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGAA 211078 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| ||||||||||| || || || | || ||||| | || Sbjct 211079 AGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGGG 211138 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||| |||| | ||| | ||||| | || | | | || ||||| |||||| Sbjct 211139 ATGCCCTCTTTGT-CTTGAATCTTTGCCTTGACATTGTCAATGGTATCGCTGCTCTCCAC 211197 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| || || || || ||||| |||||||| ||||| Sbjct 211198 CTCCAAAGTAATCGTCTTTCCAGTGAGAGTCTTCACGAAAATTTGCAT 211245 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||||||||||||||||||||| |||||||| Sbjct 211247 CCACCACGGAGACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 211306 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||| || ||||| || || || ||||| || || || | ||| Sbjct 211307 AGGGTGCGACCGTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGA 211366 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || |||| | || | ||||| | ||| | | | || ||||| ||| || Sbjct 211367 ATGCCTTCTTTGT-CTTGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTAC 211425 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| || || || || || || || || |||||||| Sbjct 211426 CTCCAAAGTGATCGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 41677 CTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAG 41736 ||| ||||| |||||| | |||||| |||| |||||||||||||| ||||| || || Sbjct 211969 CTGGATGTTGTAGTCGCTCAAGGTGCGGCCGTCTTCGAGCTGCTTGCCTGCGAAGATGAG 212028 Query 41737 GCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || |||||||| | ||||| | ||||||||| Sbjct 212029 ACGTTGTTGGTCAGGGGGAATACCCTCCTTGTC 212061 >seq221 Length=819827 Score = 104 bits (114), Expect = 2e-17 Identities = 166/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || ||||| || | ||| ||||| || || || ||| |||||||||||||| ||||| Sbjct 382199 CCACCGCCACGCAAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCC 382140 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || ||||| | | || || ||||||||||| || || |||| | ||||| || | Sbjct 382139 GACAGGGTCCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGA 382080 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTC---GCTCG 41807 |||| | |||||||||| ||| || ||| || | || | |||||| ||| Sbjct 382079 GGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG--ATAGTGTCCGAGCT-- 382024 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| ||||||| ||| || || || || |||| ||||| || || || ||||| Sbjct 382023 -CTCGACCTCCAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || ||||||| ||||| || ||||| ||||| |||||||| Sbjct 381968 CCTCCGCGAAGACGAAGGACGAGATGCAAGGTGCTTTCTTTCTGGATGTTGTAGTCGGAC 381909 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || ||||||||||| ||||| || ||||| ||||||||||| | ||| Sbjct 381908 AAAGTTCTGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCGGGAGGA 381849 Query 41756 ACGCTCTCCTTGTC 41769 | || ||| ||||| Sbjct 381848 ATGCCCTCTTTGTC 381835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301197282000