Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq17713 131 4e-25 seq11946 111 3e-19 seq109776 109 1e-18 seq110268 91.5 3e-13 >seq17713 Length=4866 Score = 131 bits (144), Expect = 4e-25 Identities = 323/483 (67%), Gaps = 8/483 (2%) Strand=Plus/Minus Query 150707 GAAATTACAACCGAATTGTTTTCTGTAGGCGTCGCACATTTCGATTCCGGCTATCTTCGC 150766 ||||||||| ||| | || || ||| || ||||| | | ||| || || || || | Sbjct 3729 GAAATTACAGCCGTACTGAGATCGGTAAGCTTCGCATAGCTTGATCCCTGCAATTTTTGA 3670 Query 150767 TATCGCGTATGGTTTGTTAGTAGGTTCGAGAAACCCGGTCATCAGG-TATTCTTCTTTGA 150825 || || || |||| |||||| ||||| || | ||| || | || || ||| || | Sbjct 3669 AATTGCATAGGGTTCGTTAGTTGGTTCAAGCACCCCTGTTAGCAAACTACTCTCAGTTAA 3610 Query 150826 TGGGGTTTGGGGATTCTTTCGGGTATATACAGCTACTCCCGAGGAA-AACGAGTTTTTT- 150883 || | | || ||| |||||||||||| ||| || | ||| ||| | |||||| Sbjct 3609 CGGT-TGAGCGGCCATTTTAGGGTATATACAGGAACTGCCTAAGAACAACAATTTTTTTA 3551 Query 150884 CA-CATTGAATGTTTTAGAAGCGTGGATAACGTTCGTTTGAATCATCAGGTTGTCACGAA 150942 || |||| || | |||||| || |||| |||| || |||||| | || ||| || Sbjct 3550 CACCATTCAA---ATAAGAAGCATGAATAATATTCGCTTCAATCATTAAATTATCATAAA 3494 Query 150943 TAAAATCACCACCAAAAGAATTGTTTGCATGAATACCCCCTACTTTGGCAGCGGCGAGAA 151002 ||| || | | | || ||| ||||||| || || || |||||||| || || | || Sbjct 3493 GAAATTCCGCTCTATAAATATTATTTGCATTTATCCCTCCCACTTTGGCGGCAGCTAAAA 3434 Query 151003 ATACGTATTCTGGTGTTTCCATTTCGAAAAATGCGGTCACTTCTTGTTGATTGGTCAAAT 151062 | || ||||| ||| ||||||| || ||||| | | |||| |||||| | | || Sbjct 3433 AAACATATTCCGGTTTTTCCATCTCAAAAAAATCTCTTACTTTACTTTGATTTCTTAGAT 3374 Query 151063 CGAGTTCTTTAGATGATCGGGTGATGATATTTGTATAACCCTCTTTCTGTAGCAGTCTTA 151122 | || |||| ||||| || || | ||||| || | || | || | | || | Sbjct 3373 CAAGATCTTGGGATGAACGTGTTACTATATTATTAAAGCCTTTCTTTTTCAACAAACGGG 3314 Query 151123 CCAGCGAGCTTCCAACCATTCCAGTATGACCAGCCACGTAGATTTTAGAGTGCTTATCCA 151182 | | | |||||||||||| |||||||||| | || ||||| || | | | ||| Sbjct 3313 TTATTGCACCGCCAACCATTCCATTATGACCAGCAATATATATTTTTGAATTTTGAACCA 3254 Query 151183 TTA 151185 ||| Sbjct 3253 TTA 3251 >seq11946 Length=4023 Score = 111 bits (122), Expect = 3e-19 Identities = 251/375 (67%), Gaps = 2/375 (1%) Strand=Plus/Plus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 || ||||| ||||| ||| |||||||| ||||||| | ||||| |||||| ||| Sbjct 2408 CAGGCATCCACATCCGAATTGTATGGATTGGTTCAAGCTGTCCCTCAGTCAGAAACTACT 2467 Query 61149 CCGTTTTATCCTC-GTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAA 61207 ||||||||||| | || |||| || | ||||||||||| || || || ||||| Sbjct 2468 CCGTTTTATCCGCGGTCGCCC-TACGCAGTTGCAAAACTCTATGCCTATTGGATAACCGT 2526 Query 61208 AAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAG 61267 |||||| ||||| | ||||| ||||||| || ||| ||| || ||||| || || Sbjct 2527 AAATTATCGCGAAGCCTATGGCATGTTTGCTTGCAACGGGATACTATTTAATCATGAAAG 2586 Query 61268 TCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTTT 61327 ||| | || | ||||| || |||||||| ||| || | || || ||| Sbjct 2587 TCCATTGCGGGGCGAAACTTTTGTTACACGTAAAATAACGCGCGCTGCGGCCAAAATTGC 2646 Query 61328 TAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATA 61387 ||| | |||| ||||| | || || | || | || | |||||||| | Sbjct 2647 CTTGGGTTTACAAAATAAATTGTATTTGGGTAATCTTGATGCACAACGGGATTGGGGGCA 2706 Query 61388 TGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGACTA 61447 ||| |||| ||| ||||||| |||| | || | || |||||| ||||| || | Sbjct 2707 TGCAAAAGACTATGTCGAGGCAATGTATCTTATTCTTCAGCAAGATGAACCAGAAGATTT 2766 Query 61448 CGTTATTGCGACTGG 61462 || || || || || Sbjct 2767 TGTAATAGCCACCGG 2781 >seq109776 Length=48066 Score = 109 bits (120), Expect = 1e-18 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||||| |||| ||| | |||||||| |||||||| || ||||| | Sbjct 3742 CTCATCGGCATGAACGCCAAACTAATGTGCCAGTACATTGAATTCGTCGCTGACCGGTTG 3683 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | |||| || || | ||||| | ||||| |||| |||||| || | || ||||| Sbjct 3682 CTAATTGCTCTCGGCAATGAGAAGATTTACAAGTCTACGAACCCATTCGACTTCATGGAT 3623 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTC--GAAAAGCGTGTCAG 230612 | || || || || || ||||| ||||||||| |||| ||||||||| Sbjct 3622 ATGATCTCACTCCAGGGCAAGACTAACTTCTTCGAGAAACGCGTGTCAG 3574 >seq110268 Length=37665 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 281735 CAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCC 281794 ||||| ||||||||| ||||| || || ||||| ||||| |||| | | || || Sbjct 12024 CAGTTGCGTGAAGATGTACCTGGCTGATGCATGGTCCTTACCGCCCTCGTGGCGCGTACC 12083 Query 281795 AAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAG 281854 | ||||||| | |||| ||| || | ||| ||||| || ||||| ||||| ||||| Sbjct 12084 ATACTGACCATTGGGCATTAACAGATTCAGGTTGTTGCTTCCAACGTAGTCCTGCGCCAG 12143 Query 281855 GTTGACGATTGTC-CCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAA 281913 ||||||||| ||| | |||| | || || || |||||| ||| || ||| Sbjct 12144 GTTGACGATGGTCTGGGTCAAGCTCT-GTTCTCCATGATGATAGCACGAGTGCTCTCCAA 12202 Query 281914 CATAACCACTGAACTGTGCTACCT 281937 |||||||| | || |||| |||| Sbjct 12203 CATAACCAATCAATTGTGAGACCT 12226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056316851702630