Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq107681 273 2e-68 seq58313 163 3e-35 seq109776 136 4e-27 >seq107681 Length=5071 Score = 273 bits (302), Expect = 2e-68 Identities = 607/895 (68%), Gaps = 28/895 (3%) Strand=Plus/Minus Query 16671 TTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATAT 16730 || |||||||||| | || | |||||| || || || |||||||| | ||| ||||| Sbjct 4510 TTTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCCTTGTAGGGATATCA 4451 Query 16731 TCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGA 16790 ||||||| |||||||| || |||| || | | ||||| || ||||||||| | | Sbjct 4450 TCTCCATAAAATCAAACGGGTTAGATGCGCCGTACACTTTAGGATAACCCAGTTCGCCTA 4391 Query 16791 TTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAA 16850 | | || || ||||| || || ||||||| ||| |||| |||||| ||||| | Sbjct 4390 ACCAACGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAGCGTTCATCCCTATTA 4331 Query 16851 GACG-TACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATA 16909 ||| |||||| | || || || | |||| || || || | ||||| || ||||| Sbjct 4330 -ACGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAATCTCTACCGCGTCGGTAATA 4272 Query 16910 ATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAG-ATGTTTAAACATCAGACATGC 16968 || | | |||| ||| | | || ||| | || || || | ||| || || Sbjct 4271 ATTTTGGTAACTGCTTCTGTGCTCAGTTTATTCTCCAGCATACCGTAA-AGCAGGCAGGC 4213 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCG 17026 || ||||| ||| | || || || | || |||| ||||||||| ||| ||||| ||| Sbjct 4212 AAATTCGCAGTGTGAACCTTCATCGC-GC-GATATCAGTTCGTTACTAAAGGTCAATCCG 4155 Query 17027 GGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATA 17086 |||||| || ||||| |||||||| || || | ||| ||| |||||||| || Sbjct 4154 GGCATCAGGCCACGTTTTTTTAACCAGAAGATAGAACAGAAGCTCCCTGAAAAGAAAATG 4095 Query 17087 CCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATC 17146 || || || | ||||| || | || || ||||| | || ||| ||| ||| Sbjct 4094 CCTTCAACAGCCGCAAATGCTACCAAACGCTCGGCAAAGGTGCCGTTGTTG------ATC 4041 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCC----ATCGTTTCTATGGCCTT 17202 || | || ||||||| || || |||| |||| | ||||| || | || | Sbjct 4040 CAGCGCAGCGCCCACTCTGCCTT---CTTT-TGCACACATGGAATCGTATCAACCGCGTG 3985 Query 17203 AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 || || |||||||| |||| | || || ||||| || ||||| ||| | Sbjct 3984 GAACAAACGATCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTAGGT 3925 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT 17322 || ||||| ||||||||||| |||||||| ||||||||||| |||||||| | || Sbjct 3924 CTCTGAGTGGATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGGTAA 3865 Query 17323 TTGAACTTC-CACGTAGAATCGTT--CCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 ||| || || | | | ||| ||| | || || ||||||||||| || || ||||| || Sbjct 3864 TTGCACCTCGCTCAT-GAA--GTTCACAGCAAGGTTTTCGTTCACAATACCATCGCTGGC 3808 Query 17380 GGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCA 17439 ||| ||||| |||| || ||| |||||||| ||| ||| |||| | | | ||| Sbjct 3807 GGCAAAAAAAGCCAGGATGTGCGAAATGAAATGTTTCTCGCCCGGGTTCATGGCTTCCCA 3748 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 | || | || | || | || | |||||||| |||||||| || || | | || Sbjct 3747 ATGTTTCAGGTCGTCCGACAGGTCAATTTCTTCGGCTGTCCAAAAGCTGGCTTCCGATTT 3688 Query 17500 TTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTATCT 17554 ||||||||| | ||||||| || ||||| ||| || | || ||| | | |||| Sbjct 3687 TTTATACATCTCCCAAATAGCAGGGTATTTTATAGGAAGTATTACAAAGCGATCT 3633 >seq58313 Length=1260 Score = 163 bits (180), Expect = 3e-35 Identities = 351/507 (69%), Gaps = 22/507 (4%) Strand=Plus/Minus Query 16671 TTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATAT 16730 || |||||||||||| |||||||| || |||||||| |||||||||| ||| ||||| Sbjct 620 TTTTTTGGTAATCGCCCACGCGTTTCTCAAAAAAGTTGGTTTTGCCCTGTAGCGATATCA 561 Query 16731 TCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGA 16790 ||||||| |||||||| ||||| | || ||| ||| | || ||||||||| | | Sbjct 560 TCTCCATAAAATCAAACGGATTTGATGCACCGTATACTTTCGGATAGCCCAGTTCGCCCA 501 Query 16791 TTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAA 16850 |||| || |||||||| || ||||| || | ||| | || | |||||| ||||| | Sbjct 500 GCCATCTGTCGGCTACAAACTCAATATACTGACTCATCAGTTTGGCGTTCATACCTATTA 441 Query 16851 GACG-TACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATA 16909 ||| |||||| || || || | | |||| | ||||| | ||||| || |||||| Sbjct 440 -ACGATACCGGCAGCGCGTCGCTGATAAATTCCTTTTCTATCTCTACCGCGTCTTTAATA 382 Query 16910 ATACTAGCAACTCGTTCCTC-GGACGGTGTATGTTT---AAGATGTTTAAACATCAGACA 16965 || | | || || |||| | | | ||||| | ||| | ||| ||| || Sbjct 381 ATTTTGGTGAC-CG--CCTCAGTGCTCAGCTTGTTTTCCAGCATG-CTGTACAGCAGGCA 326 Query 16966 TGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAAC 17023 || || ||||| || | || || || | || |||| || |||||| || |||| | Sbjct 325 GGCAAATTCGCAGTGCGAACCTTCATCGC-GC-GATATCAGCTCGTTACTGAAAGTCAGC 268 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG-AACGACCCAGAAAAGAA 17082 || |||||| ||| ||||| || | ||| || || | | | ||| |||| |||||||| Sbjct 267 CCTGGCATCAATCCGCGTTTTTTCAGCCAGAAGATAGAGCAGAAACTACCC-GAAAAGAA 209 Query 17083 TATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACG 17142 || || || || | ||||| || | || || ||||| | || || | ||||| Sbjct 208 GATGCCTTCAACCGCAGCAAATGCCACCAAACGCTCGGC-AAAGTTGC--CGTTGTT--- 155 Query 17143 AATCCATTTCTGCACCCACTCGGCTTT 17169 ||||| | || |||| |||||||| Sbjct 154 GATCCAGCGCAGCGCCCATTCGGCTTT 128 >seq109776 Length=48066 Score = 136 bits (150), Expect = 4e-27 Identities = 290/433 (67%), Gaps = 0/433 (0%) Strand=Plus/Plus Query 16941 GTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGA 17000 |||||||||| | |||| ||| || ||||| ||| || | || ||||||| ||||| Sbjct 3883 GTTTAAGATGGCTGAACAACAGGCAGGCGAAGTCGGTGTGCATGCCTTCGTCTCGGCTGA 3942 Query 17001 TAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCG 17060 | || || || ||||||||||| |||||||| || || ||||| | |||||| || | Sbjct 3943 TGAGCTCATTGGAAAATGTCAAGCCGGGCATGAGACCGCGCTTCTTCAGCCAAAAAATGG 4002 Query 17061 CGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGG 17120 | ||||| || || || ||||| || ||||| || | ||||| ||||| | || || | Sbjct 4003 CCGCGAAAGAACCGGAGAAGAAGATCCCCTCAACCGCAGCAAAAGCGATGAGGCGCTCAG 4062 Query 17121 CGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGC 17180 | ||| | | |||| |||||| | |||| || ||||| |||| | | Sbjct 4063 CAAACGAAGTCTTCTTGTCCGAAATCCAGCGAAGAGCCCATTCTGCTTTGCGCTTGACAC 4122 Query 17181 AATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACG 17240 | || || || | || | || | | || ||| |||| | || || | Sbjct 4123 AGGGAATGGTCTCGACAGCGTCGAAAAGGTATTCACGTTCAGCAGGGTCTTTAATGTAAG 4182 Query 17241 TATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT 17300 |||| ||||| || ||| | |||||||| ||||||||||| || ||||| |||| Sbjct 4183 TATCAATGAGAAGCGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATTTGAAAACCGT 4242 Query 17301 AAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGT 17360 | ||||| || || || || ||| || || |||| || || | || || |||| Sbjct 4243 AGAAGCAGCGAGCCTCTGCGGCTTGGACCTCATTCGAGAAGCGCTCGACGAGGTTCTCGT 4302 Query 17361 TCACGATGCCGTC 17373 | ||||| || || Sbjct 4303 TGACGATACCATC 4315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516826205146680