Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq107681 201 1e-46 seq109776 134 1e-26 seq58313 123 3e-23 >seq107681 Length=5071 Score = 201 bits (222), Expect = 1e-46 Identities = 580/879 (66%), Gaps = 24/879 (3%) Strand=Plus/Minus Query 15909 TTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATAT 15968 || |||||||||| | || | |||||| ||||| || ||||| || | || ||||| Sbjct 4510 TTTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCCTTGTAGGGATATCA 4451 Query 15969 TTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTC-CGTA 16027 | |||||||||||||| || |||| || | | |||| || |||||||| | || Sbjct 4450 TCTCCATAAAATCAAACGGGTTAGATGCGCCGTACACTTTAGGATAACCCAGTTCGCCTA 4391 Query 16028 ACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATA 16087 || || | || || ||||| || || ||||| | ||| || | || || ||||| Sbjct 4390 ACCAA-CGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAGCGTTCATCCCTATT 4332 Query 16088 AGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 | |||||| | || | || | ||||| || ||| ||| | ||||| || |||| Sbjct 4331 AACGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAATCTCTACCGCGTCGGTAATA 4272 Query 16148 ATATCGGTGGCTCGTGTTTCAGA---CGGTGTATGGTTTAGGTGTTTAAACATTAGACAC 16204 || | ||| || | ||| | | || ||| | || | | || || Sbjct 4271 ATTTTGGTAACT---GCTTCTGTGCTCAGTTTATTCTCCAGCATACCGTAAAGCAGGCAG 4215 Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA--AGTTCGTTGGAAAAAGTTAACC 16262 || || ||||| ||| ||||| || | || |||| |||||||| ||| || || | Sbjct 4214 GCAAATTCGCAGTGTGAACCTTCATCGC-GC-GATATCAGTTCGTTACTAAAGGTCAATC 4157 Query 16263 CTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATA 16322 | ||||| || ||||| ||||||||||| || | | || ||| |||||||| | Sbjct 4156 CGGGCATCAGGCCACGTTTTTTTAACCAGAAGATAGAACAGAAGCTCCCTGAAAAGAAAA 4097 Query 16323 TACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAA 16382 | || ||||||| ||||| || | || || || || | || || | || || | Sbjct 4096 TGCCTTCAACAGCCGCAAATGCTACCAAACGCTCGGCAAAGGT-GC--CGTTGTTG---A 4043 Query 16383 TCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAA 16442 |||| | | |||| || || || | || | ||| ||||| || | || | | Sbjct 4042 TCCAGCGCAGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCGCGTGGA 3983 Query 16443 ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTT 16502 |||| |||||||| || | || || ||||| ||||||| ||| | | Sbjct 3982 ACAAACGATCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTAGGTCT 3923 Query 16503 CTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562 ||||||| |||||||| || |||||||| || || ||||| || || || | || || Sbjct 3922 CTGAGTGGATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGGTAATT 3863 Query 16563 GTACTTC-CACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 | || || | | | || |||| || ||||| || ||||| ||||| || || || | Sbjct 3862 GCACCTCGCTCATGAA---GTTCACAGCAAGGTTTTCGTTCACAATACCATCGCTGGCGG 3806 Query 16620 CAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAAT 16679 ||||||| |||| |||||| |||||||| ||| ||| | | | | | ||||| Sbjct 3805 CAAAAAAAGCCAGGATGTGCGAAATGAAATGTTTCTCGCCCGGGTTCATGGCTTCCCAAT 3746 Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTT 16739 ||| | || | || | || | |||||| | ||||||||||| || | | |||| Sbjct 3745 GTTTCAGGTCGTCCGACAGGTCAATTTCTTCGGCTGTCCAAAAGCTGGCTTCCGATTTTT 3686 Query 16740 TATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 ||||||| | ||||||| || ||||| ||| |||| || Sbjct 3685 TATACATCTCCCAAATAGCAGGGTATTTTATAGGAAGTA 3647 >seq109776 Length=48066 Score = 134 bits (148), Expect = 1e-26 Identities = 346/521 (66%), Gaps = 6/521 (1%) Strand=Plus/Plus Query 16112 AAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCT-CGTGTTTCAGA 16170 || || | ||| || ||| |||| || ||||| ||||||| || | ||| || || Sbjct 3816 AAGAACTCTTGCTCGATCTCAACAGCCTCTTTGATGATATTCTTGACGACGTCGTTGTGA 3875 Query 16171 CGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTC 16230 ||| | || || || | |||| || || ||||||||| || | |||||||| Sbjct 3876 -GGTCGGCGTTTAAGATGGCTGAACAACAGGCAGGCGAAGTCGGTGTGCATGCCTTCGTC 3934 Query 16231 TCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCA 16290 || |||||| || || |||||||| || || || ||||| || || ||||| | ||| Sbjct 3935 TCGGCTGATGAGCTCATTGGAAAATGTCAAGCCGGGCATGAGACCGCGCTTCTTCAGCCA 3994 Query 16291 GAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAA 16350 || || || || || || || || ||||| || |||||||| | ||||||||||| | Sbjct 3995 AAAAATGGCCGCGAAAGAACCGGAGAAGAAGATCCCCTCAACCGCAGCAAAAGCGATGAG 4054 Query 16351 TCGTTCCGCGTACGTAGCATCTT-TATTACG-AATCCATTTCTGTACCCATTCGGCTTTT 16408 || || || ||| || |||| | | || |||||| | ||||||| ||||| Sbjct 4055 GCGCTCAGCAAACGAAG--TCTTCTTGTCCGAAATCCAGCGAAGAGCCCATTCTGCTTTG 4112 Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCG 16468 | || | ||| || || || | || | || | | || ||| | || Sbjct 4113 CGCTTGACACAGGGAATGGTCTCGACAGCGTCGAAAAGGTATTCACGTTCAGCAGGGTCT 4172 Query 16469 ATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATC 16528 | || || |||||||| || | ||| | || ||||| |||||||| || || Sbjct 4173 TTAATGTAAGTATCAATGAGAAGCGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATT 4232 Query 16529 TGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 ||||| || |||||||| |||||||| || ||| || || | || || || | Sbjct 4233 TGAAAACCGTAGAAGCAGCGAGCCTCTGCGGCTTGGACCTCATTCGAGAAGCGCTCGACG 4292 Query 16589 AGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGC 16629 |||||||| || |||||||| ||| || ||||| || || Sbjct 4293 AGGTTCTCGTTGACGATACCATCAGAGGCTGCAAAGAAAGC 4333 >seq58313 Length=1260 Score = 123 bits (136), Expect = 3e-23 Identities = 298/442 (67%), Gaps = 12/442 (3%) Strand=Plus/Minus Query 15909 TTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATAT 15968 || |||||||||| | |||||||| || || ||||| ||||| |||| || ||||| Sbjct 620 TTTTTTGGTAATCGCCCACGCGTTTCTCAAAAAAGTTGGTTTTGCCCTGTAGCGATATCA 561 Query 15969 TTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAA 16028 | |||||||||||||| ||||| | || ||| || | || |||||||| | Sbjct 560 TCTCCATAAAATCAAACGGATTTGATGCACCGTATACTTTCGGATAGCCCAGTTCGCCCA 501 Query 16029 CTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA 16088 |||| || |||||||| || ||||| |||| ||| | | | || || ||||| | Sbjct 500 GCCATCTGTCGGCTACAAACTCAATATACTGACTCATCAGTTTGGCGTTCATACCTATTA 441 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 |||||| || || | | | ||||| | ||||||| | ||||| |||||||| | Sbjct 440 ACGATACCGGCAGCGCGTCGCTGATAAATTCCTTTTCTATCTCTACCGCGTCTTTAATAA 381 Query 16149 TATCGGTGGCTCGTGTTTCAG-ACGGTGTATGGTTT--AGGTGTTTAAACATTAGACACG 16205 | | |||| | | |||| | | || ||| || | ||| || || | Sbjct 380 TTTTGGTGAC---CGCCTCAGTGCTCAGCTTGTTTTCCAGCATGCTGTACAGCAGGCAGG 324 Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA--AGTTCGTTGGAAAAAGTTAACCC 16263 | || ||||| || ||||| || | || |||| || ||||| ||||| | ||| Sbjct 323 CAAATTCGCAGTGCGAACCTTCATCGC-GC-GATATCAGCTCGTTACTGAAAGTCAGCCC 266 Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAATA 16322 |||||| ||| ||||| || | |||||| || | |||| || ||||||||||| | Sbjct 265 TGGCATCAATCCGCGTTTTTTCAGCCAGAAGATAG-AGCAGAAACTACCCGAAAAGAAGA 207 Query 16323 TACCCTCAACAGATGCAAAAGC 16344 | || ||||| | ||||| || Sbjct 206 TGCCTTCAACCGCAGCAAATGC 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510703527591320