Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq109776 140 4e-28 seq18333 104 3e-17 >seq109776 Length=48066 Score = 140 bits (154), Expect = 4e-28 Identities = 374/569 (66%), Gaps = 12/569 (2%) Strand=Plus/Plus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| || || ||||| ||| ||| | || ||||||| || || | || |||||| Sbjct 3897 AACAACAGGCAGGCGAAGTCGGTGTGCATGCCTTCGTCTCGGCTGATGAGCTCATTGGAA 3956 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || | |||||||| || || ||||| || |||||||| |||| ||| || || || Sbjct 3957 AATGTCAAGCCGGGCATGAGACCGCGCTTCTTCAGCCAAAAAATGGCCGCGAAAGAACCG 4016 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || ||||| || || || || || ||||| || || || | || || | || | Sbjct 4017 GAGAAGAAGATCCCCTCAACCGCAGCAAAAGCGATGAGGCGCTCAGCAAA--CGAAGTCT 4074 Query 24306 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 || ||| ||||| ||||||| || || || || ||||| || || |||| Sbjct 4075 TCTTGTCCGAAATCCAGCGAAGAGCCCATTCTGCTTTGCGCTTGACACAGGGAATGGTCT 4134 Query 24361 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 24420 | | ||| | || || || | |||| | ||||||| || |||||||| | || Sbjct 4135 CGACAGCGTCGAAAAGGTATTCACGTTCAGCAGGGTCTTTAATGTAAGTATCAATGAGAA 4194 Query 24421 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 24480 | || | || || |||||||| || || |||||||| |||||||| || | || Sbjct 4195 GCGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATTTGAAAACCGTAGAAGCAGCGAG 4254 Query 24481 CCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 |||| | || || || | | || || || | | || || || || || || | Sbjct 4255 CCTCTGCGGCTTGGACCTCATTCGAGAAGCGCTCGACGAGGTTCTCGTTGACGATACCAT 4314 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA--- 24597 || ||||||||| || || | ||||| || |||| |||| || ||| Sbjct 4315 CAGAGGCTGCAAAGAAAGCGAGGACATGAGAGATGAAATGACGCTCGT-TGTCGTTGAGG 4373 Query 24598 -GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 24656 | || ||||| |||| | ||| || || | |||| || || | ||||||||||| Sbjct 4374 CGGTTCTTCCAGTCATGTAAATCCTTTGAGAGGTCCATCTCCTCTGCAGTCCAAAATGAG 4433 Query 24657 GCCTCTGCCTTTTTATACATATTCCAGAT 24685 || || ||||| || ||||| | ||| || Sbjct 4434 GCTTCGGCCTTCTTGTACATTTGCCATAT 4462 >seq18333 Length=334 Score = 104 bits (114), Expect = 3e-17 Identities = 174/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 || ||| || || || || ||| ||| ||| ||| | |||| ||||||||||| || Sbjct 292 TAAACCAATACCGCCGGCGCTTTGAGAAATTTTAGCGGTTTGTTTCAACGTATCATATAT 233 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 54423 || || ||||| |||||| ||||| | | || |||||| |||||||| | | Sbjct 232 ACCATCAATACTGTCATCCTTCATGGTTAATAAAAAACATGATGACATTTGTGGCTTAGG 173 Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 || || |||||||| |||||||| | |||||||||||||| || | || | Sbjct 172 GGTGCCTGCATTAAACAAGGTAGGGGTTGCGTGCGTAAACCAACGCTCGCTCATCAGGTG 113 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||| || | ||| || || |||||| || ||| || || || | |||||||| || Sbjct 112 GTAGGTTTTGATGGCGCTTTCAATATCCGCTTTATGGATCCCAACCGATACACGCATAAA 53 Query 54544 CATGTGCTGAGG 54555 || ||||| || Sbjct 52 CAAATGCTGCGG 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592896319554480