Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq110395 113 3e-20 seq106734 111 1e-19 >seq110395 Length=10286 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| || ||||| ||||| ||| ||| |||| ||||||||||||||||| || Sbjct 10175 TTCCTTCTGGATATTGTAATCGGAGAGCGTGCGGCCGTCTTCCAACTGCTTGCCTGCAAA 10116 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| || |||||||||||| || | || |||||||| ||||| ||| | | Sbjct 10115 AATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 10056 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | |||| ||| ||||| || | |||||||| || || ||||| || || || Sbjct 10055 ATCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTCCCAGTGAGCGTCTTGAC 9996 Query 34378 AAAGATCTGCAT 34389 || || ||||| Sbjct 9995 GAATATTTGCAT 9984 Score = 105 bits (116), Expect = 4e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || |||| || | || || ||||| |||||||||||||| Sbjct 9982 CCGCCGCGAAGACGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 9923 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || || ||||| || ||| ||| Sbjct 9922 AGGGTACGCCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCGGGGGGG 9863 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | || ||||| || || ||||| ||| | | | | || | ||||| |||||||| Sbjct 9862 ATGCCTTCCTTATC--CTGGATTTTGGCCTTAACGTTGTCGATGGTATCGGACGATTCGA 9805 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||| || || || || || || || || ||||||||||| Sbjct 9804 CCTCGAGGGTGATCGTCTTCCCAGTAAGCGTCTTAACGAAGATCTGCAT 9756 >seq106734 Length=403 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || || ||||| || ||| || |||| |||||||||||||| ||||| Sbjct 221 TCCTTCTGGATATTATAGTCCGAGAGCGTGCGCCCGTCCTCCAACTGCTTGCCGGCGAAG 162 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || || || |||||| ||| | | |||||||| ||||| ||| | | | Sbjct 161 ATCAGACGTTGTTGGTCGGGGGGGATACCTTCCTTGTCCTGAATCTTGGCCTTGACGTTG 102 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || || |||| |||||| || ||||| ||||| || |||||| Sbjct 101 TCGATAGTGTCCGAAGACTCTACCTCCAGCGTGATTGTCTTGCCCGTGAGCGTCTTCACA 42 Query 34379 AAGATCTGCATCGCTC 34394 |||||||||||| ||| Sbjct 41 AAGATCTGCATCCCTC 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322634152734560