Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq107681 143 2e-29 >seq107681 Length=5071 Score = 143 bits (158), Expect = 2e-29 Identities = 491/759 (65%), Gaps = 26/759 (3%) Strand=Plus/Minus Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001 ||||||| || || | || || |||||||||||||| ||||| |||| || || || Sbjct 4510 TTTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCCTTGTAGGGATATCA 4451 Query 16002 TTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACA 16061 | |||||||||||||| || || || | || |||| | |||| ||| | Sbjct 4450 TCTCCATAAAATCAAACGGGTTAGATGCGCCGTACACTTTAGGATAACCCAGTTCGCCTA 4391 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | | | || |||||||| || || || || |||| || | | |||||| ||||||| Sbjct 4390 ACCAACGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAGCGTTCATCCCTATTA 4331 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 | || || | ||| || || | ||| | |||||| || | ||||| || | || | Sbjct 4330 ACGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAATCTCTACCGCGTCGGTAATAA 4271 Query 16182 TATCTCTTACTACACTATTTAACGGAGGGTTTAATA---AGTGTT---TAAACATTATAC 16235 | | | ||| | | | | | || |||| | || | |||| | | Sbjct 4270 TTTTGGTAACTGCT-TCTGTG-CTCAG--TTTATTCTCCAGCATACCGTAAAGC--AGGC 4217 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 | ||||| || || || | ||||| || | ||| | ||||| ||| || | | Sbjct 4216 AGGCAAATTCGCAGTGTGAACCTTCATCGCGCGATATCAGTTCGTTACTAAAGGTCAATC 4157 Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA----CCAGAAAAG 16351 | ||||| || || |||||||| | ||| || |||| || ||| || |||||| Sbjct 4156 CGGGCATCAGGCCACGTTTTTTTAACCAGAAGATAG----AACAGAAGCTCCCTGAAAAG 4101 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411 || || |||||||| || |||||||| ||||| ||||| | | || | || || Sbjct 4100 AAAATGCCTTCAACAGCCGCAAATGCTACCAAACGCTCGGCAAAGGTGCCGTTGTTG--- 4044 Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471 ||||| ||||| | ||| || | || ||||| || | || | || Sbjct 4043 ---ATCCAGCGCAGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCGCG 3987 Query 16472 TTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 | || ||| || |||||| ||| ||| ||||||||||| |||| || Sbjct 3986 TGGAACAAACGATCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTAG 3927 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591 | ||||| || || |||||||| ||||||||||| |||||||| | ||||||| | Sbjct 3926 GTCTCTGAGTGGATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGGT 3867 Query 16592 ATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCT 16651 | ||| || || || | | || | ||||||||| || || |||||||| || Sbjct 3866 AATTGCACCTCGCTCATGAAGTTCACAGCAAGGTTTTCGTTCACAATACCATCGCTGGCG 3807 Query 16652 GCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCG 16690 |||||||| || || ||||| ||| |||| ||| ||| Sbjct 3806 GCAAAAAAAGCCAGGATGTGCGAAATGAAATGTTTCTCG 3768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461869102538600