Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq12595 96.9 3e-16 seq3089 84.2 2e-12 >seq12595 Length=1103 Score = 96.9 bits (106), Expect = 3e-16 Identities = 118/158 (75%), Gaps = 5/158 (3%) Strand=Plus/Plus Query 14518 TTATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTT 14577 ||||||||| || ||||| || ||||| || | ||||| |||||||| |||||| Sbjct 829 TTATGGCAACAGGTACAGTTAAGTGGTTCAATGATTCCAAAGGCTTTGGCTTCATCACTC 888 Query 14578 CAGAAGAAGGCA---AAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGAT-GGATTC 14633 |||| || ||| | ||| ||||||| |||||||| |||||| || ||| || ||| Sbjct 889 CAGATGACGGCGGCGAGGATCTGTTCGCGCACTTCTCCGCAATC-AACATGAACGGTTTC 947 Query 14634 AAATCACTTGATGAAGGTCAAAAAGTTGAATTTGATGT 14671 || | || | ||||||||||||||| |||| || || Sbjct 948 AAGACCCTCAAAGAAGGTCAAAAAGTTCAATTCGAAGT 985 >seq3089 Length=8345 Score = 84.2 bits (92), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 6/136 (4%) Strand=Plus/Plus Query 14506 AGGAAATAAATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTG 14565 ||||||| | | ||||||| ||| | ||||||||||| || | || || || | Sbjct 4862 AGGAAAT---TGTAATGGCAACTGGCATCGTAAAATGGTTCAATGATTCGAAGGGTTTCG 4918 Query 14566 GCTTTATCACTTCAGAAGAAGGCA---AAGATTTGTTCGCTCACTTCTCAGCAATCCAAT 14622 |||||||||| | || |||||| ||||| |||||||||||||||| || ||||| | Sbjct 4919 GCTTTATCACCCCTGACGAAGGCGGCGAAGATCTGTTCGCTCACTTCTCGGCGATCCAGT 4978 Query 14623 CTGATGGATTCAAATC 14638 | | || |||||||| Sbjct 4979 CGAACGGCTTCAAATC 4994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48392099194946