Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq107681 158 1e-33 seq58313 93.3 4e-14 >seq107681 Length=5071 Score = 158 bits (174), Expect = 1e-33 Identities = 574/889 (65%), Gaps = 16/889 (2%) Strand=Plus/Minus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 ||||| ||||||| || || | || |||||||||||||| || ||||| |||| || Sbjct 4517 ACGCCGCTTTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCCTTGTAGG 4458 Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 14023 ||||| | |||||||||||||| || || | || |||||||| | |||| ||| Sbjct 4457 GATATCATCTCCATAAAATCAAACGGGTTAGATGCGCCGTACACTTTAGGATAACCCAGT 4398 Query 14024 TCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATA 14083 || || | | || || | |||||||| ||||| ||| || | | ||||| Sbjct 4397 TCGCCTAACCAACGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAGCGTTCATC 4338 Query 14084 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 14143 ||||||| ||| || | | | ||| | |||||||||||| || || || ||| Sbjct 4337 CCTATTAACGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAATCTCTACCGCGTCG 4278 Query 14144 TTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTA---AAAATT 14200 | ||||| | |||| ||| | || |||| | | | || ||| Sbjct 4277 GTAATAATTTTGGTAACTGCTTC--TGTGCTCAGTTTATTCTCCA-GCATACCGTAAAGC 4221 Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 | || ||||| || || || || ||||| | || |||||||| ||| || Sbjct 4220 AGGCAGGCAAATTCGCAGTGTGAACCTTCATCGCGCGATATCAGTTCGTTACTAAAGGTC 4161 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||||| || |||||||||||||| || || | | ||| || |||||| Sbjct 4160 AATCCGGGCATCAGGCCACGTTTTTTTAACCAGAAGATAGAACAGAAGCTCCCTGAAAAG 4101 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || || ||||| || ||||| |||| || || || |||| | ||| ||||| Sbjct 4100 AAAATGCCTTCAACAGCCGCAAATGCTACCAAACGCTCGGCAAA-GGTGC--CGTTGTT- 4045 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 ||||| ||||| || | || |||| | | | || || |||| || Sbjct 4044 --GATCCAGCGCAGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCGCG 3987 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 | || ||| | || || || | | |||||| ||||| || |||| || Sbjct 3986 TGGAACAAACGATCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTAG 3927 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 | || ||||| ||||| ||||| ||||||||||| ||||| || | ||||| | Sbjct 3926 GTCTCTGAGTGGATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGGT 3867 Query 14561 CATTGTACCT--CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 |||| |||| || | | || | | | || | ||||| || || |||||||| || | Sbjct 3866 AATTGCACCTCGCTCA-TGAAGT-TCACAGCAAGGTTTTCGTTCACAATACCATCGCTGG 3809 Query 14619 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCC 14678 | |||||||| |||| |||| ||| || | || ||| | | | | || || Sbjct 3808 CGGCAAAAAAAGCCAGGATGTGCGAAATGAAATGTTTCTCGCCCGGGTTCATGGCTTCCC 3749 Query 14679 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTT 14738 ||| | || | || || || | ||| || |||||||||| || || | | || Sbjct 3748 AATGTTTCAGGTCGTCCGACAGGTCAATTTCTTCGGCTGTCCAAAAGCTGGCTTCCGATT 3689 Query 14739 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 |||||||||| |||| || | ||| |||||||| | |||||| Sbjct 3688 TTTTATACATCTCCCAAATAGCAGGGTATTTTATAGGAAGTATTACAAA 3640 >seq58313 Length=1260 Score = 93.3 bits (102), Expect = 4e-14 Identities = 308/470 (66%), Gaps = 12/470 (3%) Strand=Plus/Minus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 || ||||| ||||||| || || | || | ||| ||||| ||||| ||||| || | Sbjct 630 ATTACGCCGCTTTTTTGGTAATCGCCCACGCGTTTCTCAAAAAAGTTGGTTTTGCCCTGT 571 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCT 14020 || ||||| | |||||||||||||| ||||||| || | ||||| | | || Sbjct 570 AGCGATATCATCTCCATAAAATCAAACGGATTTGATGCACCGTATACTTTCGGATAGCCC 511 Query 14021 AGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTC 14080 ||||| || |||| || || | ||||||||||| ||| ||| | | ||| Sbjct 510 AGTTCGCCCAGCCATCTGTCGGCTACAAACTCAATATACTGACTCATCAGTTTGGCGTTC 451 Query 14081 ATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCC 14140 |||||||||| ||| || | | | | | |||||| |||||||| || || Sbjct 450 ATACCTATTAACGATACCGGCAGCGCGTCGCTGATAAATTCCTTTTCTATCTCTACCGCG 391 Query 14141 TCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT--AG-ATGTTTAAAA 14197 || || ||||| | || | ||| | || | |||| || ||| | | Sbjct 390 TCTTTAATAATTTTGGTGACCGCCTCAGT--GCTCAGCTTGTTTTCCAGCATG-CTGTAC 334 Query 14198 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAA 14255 | | || ||||| || || || || ||||| | || || ||||| ||||| Sbjct 333 AGCAGGCAGGCAAATTCGCAGTGCGAACCTTCATCGCGCGATATCAGCTCGTTACTGAAA 274 Query 14256 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCG 14314 || | |||||||||||||| |||||||| | ||| || || | ||| ||| || Sbjct 273 --GTCAGCCCTGGCATCAATCCGCGTTTTTTCAGCCAGAAGATAG-AGCAGAAACTACCC 217 Query 14315 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14364 |||||||| || || ||||| |||||||| || | || || || |||| Sbjct 216 GAAAAGAAGATGCCTTCAACCGCAGCAAATGCCACCAAACGCTCGGCAAA 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481675133586680