Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq107681 244 9e-60 seq58313 167 2e-36 seq110395 132 4e-26 seq103458 127 2e-24 seq106734 89.7 5e-13 >seq107681 Length=5071 Score = 244 bits (270), Expect = 9e-60 Identities = 599/898 (67%), Gaps = 24/898 (3%) Strand=Plus/Plus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 ||||| || |||| || |||| || | |||||| | ||||| ||||| | ||||| Sbjct 3640 TTTGTAATACTTCCTATAAAATACCCTGCTATTTGGGAGATGTATAAAAAATCGGAAGCC 3699 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTC 57659 |||||||| | ||||||| | |||||||| | || |||| ||||||| || | Sbjct 3700 AGCTTTTGGACAGCCGAAGAAATTGACCTGTCGGACGACCTGAAACATTGGGAAGCCATG 3759 Query 57660 AAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGT 57719 || |||| | |||| ||| ||| | |||| ||||| ||||| ||||||| Sbjct 3760 AACCCGGGCGAGAAACATTTCATTTCGCACATCCTGGCTTTTTTTGCCGCCAGCGATGGT 3819 Query 57720 ATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGCGA 57777 ||||| ||||| || | | | || |||| || | |||||| | | || || Sbjct 3820 ATTGTGAACGAAAACCTTGCTGT--GAACTTCATGAGCGAGGTGCAATTACCCGAAGCCC 3877 Query 57778 GATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTAC 57837 | ||||||||||| ||||| | || || ||| | || ||||| | || |||||| Sbjct 3878 GTTGCTTTTACGGTTTTCAGATCATGATGGAGAACATCCACTCAGAGACCTACGCGCTAC 3937 Query 57838 TCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAA 57897 | || ||||| ||| | || ||| | || ||| | | ||||| ||||| | || | Sbjct 3938 TGATAGATACTTACATTAAAGACCCGGTTGAAAAAGATCGTTTGTTCCACGCGGTTGATA 3997 Query 57898 CAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG 57957 | || || | ||||||||||||||| | | ||||| || | |||| Sbjct 3998 CGATTCCATGTGTGCAAAAGAAGGCAGAGTGGGCGCTGCGCTGGATCAACA-----ACGG 4052 Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 | || || |||||| | | | || || || || || ||||| || |||||||| || | Sbjct 4053 C-ACCTTTGCCGAGCGTTTGGTAGCATTTGCGGCTGTTGAAGGCATTTTCTTTTCAGGGA 4111 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 |||| | || || ||| | || ||||| |||||||||||||| |||| ||||| | Sbjct 4112 GCTTCTGTTCTATCTTCTGGTTAAAAAAACGTGGCCTGATGCCCGGATTGACCTTTAGTA 4171 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACT--GATTTTGCGTGCCTAATGTACTC 58135 |||| ||||||||||||| || || | || ||| || ||||| ||||| | ||| Sbjct 4172 ACGAACTGATATCGCGCGATGAAGG--TTCACACTGCGAATTTGCCTGCCTGCTTTACGG 4229 Query 58136 TCACATTGTCAATAAACCGA-CGCGGGATCGCA-TCTTGGACATTATCACCGAGGCGGTC 58193 | | | ||||||| || | | | | ||| | | ||||| ||||| ||||| Sbjct 4230 TATGCTGGAGAATAAACTGAGCACAGAA--GCAGTTACCAAAATTATTACCGACGCGGTA 4287 Query 58194 GCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAAT 58253 | ||| ||||| || ||| | ||||| || | ||||| | | | || |||||| | Sbjct 4288 GAGATTGAAAAAGAATTTATTACCGACGCATTGCCGGTATCGTTAATAGGGATGAACGCT 4347 Query 58254 GATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGA 58313 | |||||| | |||||||||||||| || ||| | || ||||||| || Sbjct 4348 AAATTGATGAGCCAATACATTGAGTTTGTGGCTGACCGTTGGTTAGGCGAACTG---GGT 4404 Query 58314 GAGCGTCA---TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 | | | | ||| | | || ||||||||||||||| | |||| || || | Sbjct 4405 TATCCTAAAGTGTACGGCGCATCTAACCCGTTTGATTTTATGGAGATGATATCCCTACAA 4464 Query 58371 GGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGA 58428 ||||| || || || || ||||||| || | || || |||||| ||||||| ||| Sbjct 4465 GGCAAAACCAATTTCTTTGAAAAAAGGGTAGGAGATTACCAAAAAAGCGGCGTGCTGA 4522 >seq58313 Length=1260 Score = 167 bits (184), Expect = 2e-36 Identities = 331/482 (69%), Gaps = 15/482 (3%) Strand=Plus/Plus Query 57954 ACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCG 58013 ||||| || || |||||| | | | || || || || || ||||| || ||||||||| Sbjct 159 ACGGCAACTTT-GCCGAGCGTTTGGTGGCATTTGCTGCGGTTGAAGGCATCTTCTTTTCG 217 Query 58014 GGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 || || || ||| | || || ||| |||| |||||||| ||||||| || ||||| || Sbjct 218 GGTAGTTTCTGC-TCTATCTTCTGGCTGAAAAAACGCGGATTGATGCCAGGGCTGACTTT 276 Query 58073 TAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTA 58132 || |||||| ||||||||||||| || ||| || || ||||| ||||| |||| Sbjct 277 CAGTAACGAGCTGATATCGCGCGATGAAGGTTCGCACTGCGAATTTGCCTGCCTGCTGTA 336 Query 58133 CTCTCACATTGTCAATAAACCGA-CGCGGGATCGCATCTTGGACATTATCACCGAGGCGG 58191 | | | || || | || | | | || || | ||||| | || |||| Sbjct 337 CAGCATGCTGGAAAACAAGCTGAGCACTGAGGCG-GTCACCAAAATTATTAAAGACGCGG 395 Query 58192 TCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACA 58251 | | ||| ||||| || ||| ||| ||| || || ||||| | | | ||||||||| Sbjct 396 TAGAGATAGAAAAGGAATTTATCAGCGACGCGCTGCCGGTATCGTTAATAGGTATGAACG 455 Query 58252 ATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTG---- 58307 | ||||| |||| ||||||||||| ||||||||| || ||||||| Sbjct 456 CCAAACTGATGAGTCAGTATATTGAGTTTGTAGCCGACAGATGGCTGGGCGAACTGGGCT 515 Query 58308 ATTGGAGAGCGT-CATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCT 58366 || || || | | | || | ||||||||||||||||||| | |||| ||||| Sbjct 516 ATCCGAAAGTATACGGTGCATC-----AAATCCGTTTGATTTTATGGAGATGATATCGCT 570 Query 58367 CGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGAT 58426 ||||||| || |||||||| || ||| || |||| || |||||| |||||| || Sbjct 571 ACAGGGCAAAACCAACTTTTTTGAGAAACGCGTGGGCGATTACCAAAAAAGCGGCGTAAT 630 Query 58427 GA 58428 || Sbjct 631 GA 632 >seq110395 Length=10286 Score = 132 bits (146), Expect = 4e-26 Identities = 158/213 (74%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || || || || |||||| |||| || || |||| Sbjct 9983 CATGCAAATATTCGTCAAGACGCTCACTGGGAAGACCATCACCCTCGAGGTCGAGTCGTC 10042 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||||||||||||| | ||||||||||| Sbjct 10043 CGACACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCA 10102 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| |||||||||||| || | |||||| || Sbjct 10103 GCAGCGCCTGATTTTTGCAGGCAAGCAGTTGGAAGACGGCCGCACGCTCTCCGATTACAA 10162 Query 31372 CATTCAAAAAGAATCGACTCTTCATC-TGGTAC 31403 || || || |||||||| || |||| |||||| Sbjct 10163 TATCCAGAAGGAATCGACCCTCCATCTTGGTAC 10195 >seq103458 Length=5285 Score = 127 bits (140), Expect = 2e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 ||||| ||||| ||||| |||||||| |||| ||||| ||||| ||| || |||||| Sbjct 1594 AAAAGGTCCGGAATCCAGAGAGCGTAAAACAAGTCGCGCGCGCGAGACTCTTCCTTGCCG 1535 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| | || | ||||| || |||||||||||||| || || || |||| Sbjct 1534 TGATTCTTTCGAAGGTCGATGAAGTCGAATACGTCCGCATGCCATGGTTCAAGATAAATA 1475 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGT 23526 ||||||||||||||||| || || || || ||||| || ||||| || || Sbjct 1474 GCAAACGCGCCCGGTCTTTTGTTACCTCCTTGATCAACATAACGAGCGGT 1425 Score = 113 bits (124), Expect = 4e-20 Identities = 202/291 (69%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 23648 ATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCG 23707 ||||| ||||| | || || ||||||||||| ||||| ||||| || ||||| | | Sbjct 1255 ATCATAGCGCAATTCTTGAGTGTGTCGTAGATACCCTCAATGCTATCTTCTTTCATACAG 1196 Query 23708 ACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767 | ||||||||| |||||||| | ||||| | || |||||| ||||| Sbjct 1195 ATCAAGAAACAACTGCTCATTTGCGGATGTGGCGTGCCAGCGTTGAACAGGGTCGGAGAT 1136 Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827 ||||| || ||||| | | ||||| |||||||| || || | | |||||||| Sbjct 1135 GCGTGAGTGAAGTAGCGTTCAGACATGAGATTGTAGGTTTCCAAAACTCGTTCAATGTCT 1076 Query 23828 TCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC--TCT-CGAC-CGT 23883 ||||| || || | ||||| ||||| ||||||| |||||| | ||| |||| || Sbjct 1075 GAACCGTGAATGCCAACCGCGACACGCATGATCATGTGTTGAGGGCGTTCTGCGACACG- 1017 Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 ||| || || ||| ||||| ||||||| | ||||| || ||||| Sbjct 1016 ---GCCATTGATCCTGAGAAGATAGGAACGTTCTAAGGTTTTGAAACCAAA 969 Score = 89.7 bits (98), Expect = 5e-13 Identities = 245/364 (67%), Gaps = 25/364 (7%) Strand=Plus/Minus Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 |||||| || || |||||| ||| || || |||||||| || | ||||||||| Sbjct 2528 TCATTGAAACCTAGGATCTGACTGGTGCTGGCAGTTGGCATCGGAGCGCATAGTAGCGAG 2469 Query 22583 TTTCTC-AAGCCGTGCT-TTGAAATTTTACTCTTGAGCATC--GACCAGTCCCACAGATC 22638 |||||| || |||| || ||| ||||| ||| | ||| ||| ||||||||||| Sbjct 2468 TTTCTCAAACCCGTCCTCTTG--ATTTTGGCCTTCA--ATCCTTCCCAATCCCACAGATC 2413 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAAC--ACGC-CGCGACTCGCCGGGCT 22695 || ||| || | |||||| ||| ||||||| | || | | || || || || Sbjct 2412 GGTGGGCTTCGC---TCCCCACAAATCATATTGCAGCTGACCCTTGTGA---GCTGGACT 2359 Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGC 22755 || | | || |||||||| |||| || | || | ||||| ||| ||||| || Sbjct 2358 TCCGACCCAAGTCTCGTACGGTCCATGCTTCTCAGCCAATTCGCTAGACGCTTCCAAAGC 2299 Query 22756 GCCGTAATATATAGTCTCGAAGATTT---TCTTGTTCAATTCGGCGGC-GGCGACGCTTT 22811 || | ||| || |||||||| || | | ||| || || || | || || | Sbjct 2298 ACCATGATAAATGGTCTCGAATATCTGGATGTTGAGCACTTTAGCTTCGGGTGA----AT 2243 Query 22812 CGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871 || | ||||| || | |||| ||| ||||| || | ||| || ||||| |||||||| | Sbjct 2242 CGAAAGGCATGCGAAGAATCATGAATGCGTCAGCGAGACCTTGTACGCCGATACCGATGG 2183 Query 22872 GTCG 22875 | || Sbjct 2182 GACG 2179 >seq106734 Length=403 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || ||||| | || || || | || Sbjct 31 ATGCAGATCTTTGTGAAGACGCTCACGGGCAAGACAATCACGCTGGAGGTAGAGTCTTCG 90 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | || |||||||||||| | || |||||||| Sbjct 91 GACACTATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCCGACCAA 150 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| ||||| |||||||| ||| || | || ||||| Sbjct 151 CAACGTCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGGCGCACGCTCTCGGACTATAAT 210 Query 31373 ATTCAAAAAGAATCGACTCTTCATCT-GGTA 31402 || || || || || || |||||||| |||| Sbjct 211 ATCCAGAAGGAGTCCACCCTTCATCTCGGTA 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445146779131920