Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq107681 172 7e-38 seq18333 89.7 6e-13 seq69314 84.2 3e-11 >seq107681 Length=5071 Score = 172 bits (190), Expect = 7e-38 Identities = 573/879 (65%), Gaps = 13/879 (1%) Strand=Plus/Minus Query 33289 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33348 |||||||||| || || || | |||||| || ||||| ||||| |||| | ||||| Sbjct 4510 TTTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCCTTGTAGGGATATCA 4451 Query 33349 TTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAA 33408 | ||||| ||||||||||| || | | ||| | ||| | | |||| ||| | Sbjct 4450 TCTCCATAAAATCAAACGGGTTAGATGCGCCGTACACTTTAGGATAACCCAGTTCGCCTA 4391 Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 | | | || || || || || || ||| |||||| || | ||||| ||||| | Sbjct 4390 ACCAACGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAGCGTTCATCCCTATTA 4331 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 || || | || | |||| |||||||| |||||| |||||| | || |||| Sbjct 4330 ACGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAATCTCTACCGCGTCGGTAATAA 4271 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAA-ATGTTTAAACATCAAACATGCG 33587 | |||| | |||| ||| || || | || || | || || || Sbjct 4270 TTTTGGTAACTGCTTCTGTGCTCAGTTTATTCTCCAGCATACCGTAA-AGCAGGCAGGCA 4212 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 || |||||||| ||| || || | || | ||||||| ||| || | ||||||| Sbjct 4211 AATTCGCAGTGTGAACCTTCATCGCGCGATATCAGTTCGTTACTAAAGGTCAATCCGGGC 4152 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 || |||||||| ||||| | ||| || || ||| ||| || |||||||| || ||| Sbjct 4151 ATCAGGCCACGTTTTTTTAACCAGAAGATAGAACAGAAGCTCCCTGAAAAGAAAATGCCT 4092 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 33767 || || || ||||| || | | | ||| || | | || ||| || ||||| Sbjct 4091 TCAACAGCCGCAAATGCTACCAAACGCTCGGCAAAGGTGCCGTTGT--TG-ATCCAGCGC 4035 Query 33768 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33827 | ||||| || |||||||||| ||||| || ||||| || | || | || | | Sbjct 4034 AGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCGCGTGGAACAAACGA 3975 Query 33828 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33887 | ||||||| ||||||| |||||||| |||| || || | || || || Sbjct 3974 TCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTAGGTCTCTGAGTGG 3915 Query 33888 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG-TAATCTGCACTTC 33946 ||||| || || |||||||| ||||| || || | || |||| |||| ||||| || Sbjct 3914 ATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGGTAAT-TGCACCTC 3856 Query 33947 TGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 | || |||| || | ||||| ||||| || ||||| ||||| |||||||| Sbjct 3855 GCTCATGAA--GTTCACAGCAAGGTTTTCGTTCACAATACCATCGCTGGCGGCAAAAAAA 3798 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC-AATCATTGAT 34063 |||| | || || |||| ||| ||| | || ||| | |||| ||| || | Sbjct 3797 GCCAGGATGTGCGAAATGAAATGTTTCTCGCCCGG-GTTCATGGCTTCCCAATGTTTCAG 3739 Query 34064 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 || | || | || | |||||| |||||||||| || || | ||||||||||| Sbjct 3738 GTCGTCCGACAGGTCAATTTCTTCGGCTGTCCAAAAGCTGGCTTCCGATTTTTTATACAT 3679 Query 34124 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | ||| || || | |||| || || | || ||||| Sbjct 3678 CTCCCAAATAGCAGGGTATTTTATAGGAAGTATTACAAA 3640 >seq18333 Length=334 Score = 89.7 bits (98), Expect = 6e-13 Identities = 171/252 (68%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 || ||| || || || || ||| ||| ||| ||| | |||| ||||| ||||| || Sbjct 292 TAAACCAATACCGCCGGCGCTTTGAGAAATTTTAGCGGTTTGTTTCAACGTATCATATAT 233 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGT 63661 || || || || ||||| ||||| | | || |||||| |||||||| | || Sbjct 232 ACCATCAATACTGTCATCCTTCATGGTTAATAAAAAACATGATGACATTTGTGGCTTAGG 173 Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 || || |||||||| |||||||| | |||||||||||||| || | || | Sbjct 172 GGTGCCTGCATTAAACAAGGTAGGGGTTGCGTGCGTAAACCAACGCTCGCTCATCAGGTG 113 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | || || || |||||| || ||| || || || | |||||||| || Sbjct 112 GTAGGTTTTGATGGCGCTTTCAATATCCGCTTTATGGATCCCAACCGATACACGCATAAA 53 Query 63782 CATGTGCTGAGG 63793 || ||||| || Sbjct 52 CAAATGCTGCGG 41 >seq69314 Length=381 Score = 84.2 bits (92), Expect = 3e-11 Identities = 232/356 (65%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 ||| | || | || |||||| ||||||||||| |||| ||||||||| || || Sbjct 381 TTAAACACGCGCAGCATTGGGATAATACCGTTGCTGGTACCGTTGGTACCGCCAATGTAT 322 Query 63513 CCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63572 || | ||||| | ||| ||| ||| || || || || || ||| || ||| Sbjct 321 GAACCTGTTGCACGCACATTGTGAATGCTTAGGCCGATACCGCCGGCGCTTTGCGAAATT 262 Query 63573 AATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGT 63632 || | |||| | ||||| || || || || ||||| || || ||||| | | Sbjct 261 TTAGCAGTTTGTTTCAGTGTGTCGTAAATACCATCAATGCTGTCTTCCTTCATGGTCAAC 202 Query 63633 AGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63692 | ||| || |||||||| | | ||| || || ||||| || || || | ||| Sbjct 201 AAAAAGCATGATGACATTTGTGGTTTTGGAGTGCCGGCGTTAAACAACGTTGGGGTTGCG 142 Query 63693 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63752 || |||||||| || | || |||||||| | || || || ||||| | Sbjct 141 TGTGTAAACCAGCGCTCGCTCATCAGGTTGTACGTTTTGATGGCGCTTTCAATATCTTCT 82 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 | || || ||||| | || ||||| ||||||||||| || | ||| ||||||| Sbjct 81 TTGTGGATACCTACCGATACGCGCATAAACATGTGCTGCGGGCGTTCGGCAATTTT 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628942145663280