Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq107681 123 2e-23 seq18333 95.1 1e-14 >seq107681 Length=5071 Score = 123 bits (136), Expect = 2e-23 Identities = 376/574 (66%), Gaps = 13/574 (2%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| || || ||| ||||||| || | ||| ||||| ||| ||| || ||| Sbjct 4217 CAGGCAAATTCGCAGTGTGAACCTTCATCGCGCGATATCAGTTCGTTACTAAAGGTCAAT 4158 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 |||||||||| || |||||||||| ||| || |||| | || || |||||||| Sbjct 4157 CCGGGCATCAGGCCACGTTTTTTTAACCAGAAGATAGAACAGAAGCTCCCTGAAAAGAAA 4098 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACC-TTGTTGCTAGAT 11806 || || || ||||| ||||||||||| | | || || | | || |||||| Sbjct 4097 ATGCCTTCAACAGCCGCAAATGCTACCAAACGCTCGGCAAAGGTGCCGTTGTTG------ 4044 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 ||||| ||||| || || ||||||| || ||| || || || | |||| Sbjct 4043 ATCCAGCGCAGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCGCGTGG 3984 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 || ||| | |||||| | ||| | | || |||||||| | || || | Sbjct 3983 AACAAACGATCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTAGGTC 3924 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 ||||| || || || ||||| || ||||| || || || || || || || | | Sbjct 3923 TCTGAGTGGATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGGTAAT 3864 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 || || || | ||| || | | | || | || || || ||||||||||| || | || Sbjct 3863 TGCACCTCGCTCATGAAGT-TCACAGCAAGGTTTTCGTTCACAATACCATCGCTGGCGGC 3805 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT-TTATCCCAAT 12104 |||||| || || || || || || | ||| ||| | ||| || ||||||| Sbjct 3804 AAAAAAAGCCAGGATGTGCGAAATGAAATGTTTCTCG-CCCGGGTTCATGGCTTCCCAAT 3746 Query 12105 CATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTT 12164 | | || | || | || | |||||| | |||||||| || || | |||| || Sbjct 3745 GTTTCAGGTCGTCCGACAGGTCAATTTCTTCGGCTGTCCAAAAGCTGGCTTCCGATTTTT 3686 Query 12165 TATACATTTTCCAGATATCATGATACTTAATAGG 12198 ||||||| | ||| ||| || | || || ||||| Sbjct 3685 TATACATCTCCCAAATAGCAGGGTATTTTATAGG 3652 >seq18333 Length=334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38317 GATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATT 38376 || ||| |||| |||||| ||||||||| ||||||| || |||||||||||||| || Sbjct 267 GAAATTTTAGCGGTTTGTTTCAACGTATCATATATACCATCAATACTGTCATCCTTCATG 208 Query 38377 GGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGA 38436 | || || |||||| |||||||| ||| || || || || ||||| || ||||| Sbjct 207 GTTAATAAAAAACATGATGACATTTGTGGCTTAGGGGTGCCTGCATTAAACAAGGTAGGG 148 Query 38437 GATGCATGTATGAACCA 38453 | ||| || | ||||| Sbjct 147 GTTGCGTGCGTAAACCA 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467873544671440