Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq58313 140 3e-28 seq107681 127 2e-24 seq70823 87.8 2e-12 seq110395 86.0 6e-12 seq107974 84.2 2e-11 >seq58313 Length=1260 Score = 140 bits (154), Expect = 3e-28 Identities = 356/537 (66%), Gaps = 15/537 (3%) Strand=Plus/Plus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 || ||||| | |||| | || ||||||| || || | || ||||| || |||| Sbjct 93 TCCACGCTATCGACACCATACCATGTGTGCAGAAGAAAGCCGAATGGGCGCTGCGCTGGA 152 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 || | |||| ||| |||||||| ||| |||| || |||||| || ||||| Sbjct 153 TCAACAACGGCAAC------TTTGCCGAGCGTTTGGTGGCATTTGCTGCGGTTGAAGGCA 206 Query 52652 TGtttttttCGGGTAGTTT-TGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCC 52710 | || |||||||||||||| ||| | || || | | |||| || | ||||| Sbjct 207 TCTTCTTTTCGGGTAGTTTCTGCT-CTATCTTCTGGCTGAAAAAACGCGGATTGATGCCA 265 Query 52711 GGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCG 52770 || || || || || |||||| ||||||||||||| ||||| |||| || ||||| Sbjct 266 GGGCTGACTTTCAGTAACGAGCTGATATCGCGCGATGAAGGTTCGCACTGCGAATTTGCC 325 Query 52771 TGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATG 52830 || || || | | || | || | || || ||| | | || Sbjct 326 TGCCTGCTGTACAGCATGC---TGGAAAACAAGCTGAGCACTGAGGCGGTCACCAAAATT 382 Query 52831 TTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTG 52890 ||||||| || || || || ||||| || ||| | | ||||| | || ||||| || Sbjct 383 ATTAAAGACGCGGTAGAGATAGAAAAGGAATTTATCAGCGACGCGCTGCCGGTATCGTTA 442 Query 52891 TTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTG 52950 | || |||||||| | ||||| | |||| || |||||||| || |||||| | || Sbjct 443 ATAGGTATGAACGCCAAACTGATGAGTCAGTATATTGAGTTTGTAGCCGACAGATGGCTG 502 Query 52951 ATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGT--AACCCCTTTTCGTTTATGAACA 53008 | || || | ||||| | |||| | || | || || ||| |||||| | | Sbjct 503 GGCGAACTGGGCTATCCGAA--AGTATACGGTGCATCAAATCCGTTTGATTTTATGGAGA 560 Query 53009 ACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAA 53065 |||||||| |||||||||| |||||||| |||| ||| |||||||| ||| ||| Sbjct 561 TGATATCGCTACAGGGCAAAACCAACTTTTTTGAGAAACGCGTGGGCGATTACCAAA 617 >seq107681 Length=5071 Score = 127 bits (140), Expect = 2e-24 Identities = 363/545 (67%), Gaps = 31/545 (6%) Strand=Plus/Plus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 || |||| |||| | |||| ||||||| || |||| || ||||| || |||| Sbjct 3983 TCCACGCGGTTGATACGATTCCATGTGTGCAAAAGAAGGCAGAGTGGGCGCTGCGCTGGA 4042 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 || | |||| || | |||||||| ||| |||| || ||||| || ||||| Sbjct 4043 TCAACAACGGCA------CCTTTGCCGAGCGTTTGGTAGCATTTGCGGCTGTTGAAGGCA 4096 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATT----TTACATCAAAACCTTGGGCATAATG 52707 | || ||||| || || || | || || ||| | ||||| | ||| | ||| Sbjct 4097 TTTTCTTTTCAGGGAGCTTCTGTTCTATCTTCTGGTTAAA--AAAACGT--GGCCTGATG 4152 Query 52708 CCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAG--ATT 52765 ||||| | || ||||| ||||| ||||||||||||| ||||| | ||||| | | | Sbjct 4153 CCCGGATTGACCTTTAGTAACGAACTGATATCGCGCGATGAAGG--TTCACACTGCGAAT 4210 Query 52766 TTGCGTGTTTGTATTATAATACGCGCGTTAAAGAA-AAATTGT-CATATGAAAAAATTCT 52823 |||| || || ||| || || | |||| ||| || || | ||| | || Sbjct 4211 TTGCCTGCCTGCTTTACGGTATGCTGG----AGAATAAACTGAGCACA-GAAGCAGTTAC 4265 Query 52824 AGACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGT 52883 | || ||| || || || || ||||||||||| ||| |||| ||||| || || || Sbjct 4266 CAAAATTATTACCGACGCGGTAGAGATTGAAAAAGAATTTATTACCGACGCATTGCCGGT 4325 Query 52884 ATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAG 52943 ||| || | || |||||||| | ||||| || | ||||| |||||||| || ||| | Sbjct 4326 ATCGTTAATAGGGATGAACGCTAAATTGATGAGCCAATACATTGAGTTTGTGGCTGACCG 4385 Query 52944 ACTGTTGATGC-AGCTCGGTCAGCCGAAATACTATAATGCGC--GTAACCCCTTTTCGTT 53000 || | | || | || ||| | || || | | || |||| |||||| ||| || Sbjct 4386 -TTGGTTAGGCGAACTGGGTTATCCTAA--AGTGTACGGCGCATCTAACCCGTTTGATTT 4442 Query 53001 TATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTA 53060 |||| | | ||||| || | |||||||| || || || || | | | || || || || Sbjct 4443 TATGGAGATGATATCCCTACAAGGCAAAACCAATTTCTTTGAAAAAAGGGTAGGAGATTA 4502 Query 53061 CAAAA 53065 | ||| Sbjct 4503 CCAAA 4507 >seq70823 Length=785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| ||||||||||| |||||||| ||||| | |||| || | Sbjct 328 ACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCTGAAAGAGTGCAGCCATCCTGA 269 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || |||||| |||| |||| ||||| || ||||| |||||||| |||| || Sbjct 268 AGCTGCTTGCCAGCAAAGATGAGACACTGCTGGTCAGGAGGGATGCCTTCCTTGT-TCTG 210 Query 139676 ATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | ||| | || || || ||||| ||||| | || | ||||| Sbjct 209 AATCTTGGCTTTCACATTGCCAATGGTATCAGTTGGCTCAACCTCTAATGTAATAGTCTT 150 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || || || ||||| || || Sbjct 149 CCCTGTGAGGGTCTTGACAAATATCTGTAT 120 >seq110395 Length=10286 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || || || |||||| | |||| |||||| | ||| || || Sbjct 10180 GTCGATTCCTTCTGGATATTGTAATCGGAGAGCGTGCGGCCGTCTTCCAACTGCTTGCCT 10121 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | ||||| || ||||| ||||| || |||||||| ||||| ||| || || Sbjct 10120 GCAAAAATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTG 10061 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||| | ||| | ||||| || || | ||| Sbjct 10060 ACGTTATCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTCCCAGTGAGCGTC 10001 Query 139748 TTTACGAATATTTGCAT 139764 || |||||||||||||| Sbjct 10000 TTGACGAATATTTGCAT 9984 >seq107974 Length=16430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || ||||| | || | ||| | || ||||||||||| |||||||| || ||| Sbjct 9516 CCACCACGCAAACGAAGCACAAGGTGGAGAGTGGACTCTTTTTGGATGTTATAGTCACTC 9457 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || |||| |||||||||||| || ||||| |||| || ||||| |||||||| | Sbjct 9456 AGAGT--TCGACCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGGCGTTGTTGATCGGGGG 9399 Query 139656 GTAT 139659 | || Sbjct 9398 GAAT 9395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495374464839200