Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq107681 156 4e-33 seq58313 105 6e-18 >seq107681 Length=5071 Score = 156 bits (172), Expect = 4e-33 Identities = 574/890 (64%), Gaps = 18/890 (2%) Strand=Plus/Minus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 ||||| ||||||| || || | || |||||||||||||| || ||||| |||| || Sbjct 4517 ACGCCGCTTTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCCTTGTAGG 4458 Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGT 13691 ||||| | |||||||||||||| || || || |||||||| | |||| ||| Sbjct 4457 GATATCATCTCCATAAAATCAAACGGGTTAGATGCGCCGTACACTTTAGGATAACCCAGT 4398 Query 13692 TCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13751 || || | | ||||| | ||||||||| ||||| ||| || | | ||||| Sbjct 4397 TCGCCTAACCAACGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAGCGTTCATC 4338 Query 13752 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCT 13811 ||||||| ||| || | | | ||| | |||||||||||| || || || || Sbjct 4337 CCTATTAACGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAATCTCTACCGCGTCG 4278 Query 13812 TTTATAATAATTGTAATAATCTCATTAGAAG--GAGGATATTTTAGATGTTTA---AAAA 13866 | ||||| | |||| || || | || |||| | | | || ||| Sbjct 4277 GTAATAATTTTGGTAA----CTGCTTCTGTGCTCAGTTTATTCTCCA-GCATACCGTAAA 4223 Query 13867 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 13926 | || ||||| || || || || ||||| | || |||||||| ||| | Sbjct 4222 GCAGGCAGGCAAATTCGCAGTGTGAACCTTCATCGCGCGATATCAGTTCGTTACTAAAGG 4163 Query 13927 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAA 13986 | ||||| ||||||| || |||||||||||||| || || | | || ||| |||| Sbjct 4162 TCAATCCGGGCATCAGGCCACGTTTTTTTAACCAGAAGATAGAACAGAAGCTCCCTGAAA 4103 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14046 |||| || || ||||| || ||||| |||| || || || |||| | ||| |||| Sbjct 4102 AGAAAATGCCTTCAACAGCCGCAAATGCTACCAAACGCTCGGCAAA-GGTGC--CGTTGT 4046 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 | ||||| ||||| || | || |||| | | | || || |||| | Sbjct 4045 T---GATCCAGCGCAGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCG 3989 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 | | || ||| || || || | | |||||| ||||| || |||| | Sbjct 3988 CGTGGAACAAACGATCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGT 3929 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 | | || ||||| ||||| ||||| ||||||||||| |||||||| | ||||| | Sbjct 3928 AGGTCTCTGAGTGGATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGG 3869 Query 14227 ACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 |||| || || | | || | | | || | ||||| || || |||||||| || Sbjct 3868 GTAATTGCACCTCGCTCATGAAGT-TCACAGCAAGGTTTTCGTTCACAATACCATCGCTG 3810 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345 || |||||||| |||| |||| ||| || | || ||| | ||| | || | Sbjct 3809 GCGGCAAAAAAAGCCAGGATGTGCGAAATGAAATGTTTCTCGCCCGGGTTCATGGCTTCC 3750 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405 |||| | || | || || || | ||| || |||||||||| || || | | | Sbjct 3749 CAATGTTTCAGGTCGTCCGACAGGTCAATTTCTTCGGCTGTCCAAAAGCTGGCTTCCGAT 3690 Query 14406 TTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||||||||||| |||| || | ||| |||||||| | |||||| Sbjct 3689 TTTTTATACATCTCCCAAATAGCAGGGTATTTTATAGGAAGTATTACAAA 3640 >seq58313 Length=1260 Score = 105 bits (116), Expect = 6e-18 Identities = 312/471 (66%), Gaps = 14/471 (3%) Strand=Plus/Minus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 || ||||| ||||||| || || | || | ||| ||||| ||||| ||||| || | Sbjct 630 ATTACGCCGCTTTTTTGGTAATCGCCCACGCGTTTCTCAAAAAAGTTGGTTTTGCCCTGT 571 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCT 13688 || ||||| | |||||||||||||| |||||| || | ||||| | | || Sbjct 570 AGCGATATCATCTCCATAAAATCAAACGGATTTGATGCACCGTATACTTTCGGATAGCCC 511 Query 13689 AGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13748 ||||| || |||| || || | |||||||||||| ||| ||| | | ||| Sbjct 510 AGTTCGCCCAGCCATCTGTCGGCTACAAACTCAATATACTGACTCATCAGTTTGGCGTTC 451 Query 13749 ATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCC 13808 |||||||||| ||| || | | | | | |||||| |||||||| || || Sbjct 450 ATACCTATTAACGATACCGGCAGCGCGTCGCTGATAAATTCCTTTTCTATCTCTACCGCG 391 Query 13809 TCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTT--AG-ATGTTTAAAA 13865 ||||| ||||| | || | |||| | || | |||| || ||| | | Sbjct 390 TCTTTAATAATTTTGGTGACCGCCTCAGT--GCTCAGCTTGTTTTCCAGCATG-CTGTAC 334 Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAA 13923 | | || ||||| || || || || ||||| | || || ||||| ||||| Sbjct 333 AGCAGGCAGGCAAATTCGCAGTGCGAACCTTCATCGCGCGATATCAGCTCGTTACTGAAA 274 Query 13924 ATGTTAATCCTGGCATCAATCCTCGtttttttAACC--AAAATATTGCAGCAAATGACCC 13981 || | |||||||||||||| |||||||| | || || ||| |||| ||| |||| Sbjct 273 --GTCAGCCCTGGCATCAATCCGCGTTTTTTCAGCCAGAAGATAGAGCAG-AAACTACCC 217 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032 |||||||| || || ||||| |||||||| || | || || || |||| Sbjct 216 -GAAAAGAAGATGCCTTCAACCGCAGCAAATGCCACCAAACGCTCGGCAAA 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479061172083400