Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq107681 158 1e-33 seq58313 91.5 1e-13 >seq107681 Length=5071 Score = 158 bits (174), Expect = 1e-33 Identities = 574/889 (65%), Gaps = 16/889 (2%) Strand=Plus/Minus Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419 ||||| ||||||| || || | || ||||||||||| || || ||||| |||| || Sbjct 4517 ACGCCGCTTTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCCTTGTAGG 4458 Query 13420 GATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 13479 ||||| | ||||||||||| || || || | || |||||||| | |||| ||| Sbjct 4457 GATATCATCTCCATAAAATCAAACGGGTTAGATGCGCCGTACACTTTAGGATAACCCAGT 4398 Query 13480 TCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13539 || ||| | | ||||| | ||||||||| ||||| ||| || | | ||||| Sbjct 4397 TCGCCTAACCAACGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAGCGTTCATC 4338 Query 13540 CCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 13599 ||||||| ||| || | | | || | |||||||||||| || | | || || Sbjct 4337 CCTATTAACGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAAT---CTCTACCGCG 4281 Query 13600 TTTATAATAATCTTAATAA-TGTCATTAGAAGGAGGATATTTTAGATGTTTA---AAAAT 13655 | ||||||| || ||| || | || |||| | | | || ||| Sbjct 4280 TCGGTAATAATTTTGGTAACTGCTTCTGTGCTCAGTTTATTCTCCA-GCATACCGTAAAG 4222 Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 | || ||||| || || || || ||||| | || |||||||| ||| || Sbjct 4221 CAGGCAGGCAAATTCGCAGTGTGAACCTTCATCGCGCGATATCAGTTCGTTACTAAAGGT 4162 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 13775 ||||| ||||||| || |||||||||||||| || || | | ||| || ||||| Sbjct 4161 CAATCCGGGCATCAGGCCACGTTTTTTTAACCAGAAGATAGAACAGAAGCTCCCTGAAAA 4102 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||| || || ||||| || ||||| |||| | || || |||| | ||| ||||| Sbjct 4101 GAAAATGCCTTCAACAGCCGCAAATGCTACCAAACGCTCGGCAAA-GGTGC--CGTTGTT 4045 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 ||||| ||||| || | || |||| | | | || || || | || Sbjct 4044 ---GATCCAGCGCAGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCGC 3988 Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 | ||| ||| | || || || | | |||||| ||||| || |||| || Sbjct 3987 GTGGAACAAACGATCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTA 3928 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015 | || ||||| ||||| || || ||||||||||| ||||| || | ||||| | Sbjct 3927 GGTCTCTGAGTGGATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGG 3868 Query 14016 CCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 |||| ||||| | | || | | | || | |||||| || ||||||||||| || | Sbjct 3867 TAATTGCACCTCGCTCATGAAGT-TCACAGCAAGGTTTTCGTTCACAATACCATCGCTGG 3809 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14134 | |||||||| |||| |||| ||| || | || ||| | ||| | || || Sbjct 3808 CGGCAAAAAAAGCCAGGATGTGCGAAATGAAATGTTTCTCGCCCGGGTTCATGGCTTCCC 3749 Query 14135 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14194 ||| | || | || || || | ||| || |||||||||| || || | | || Sbjct 3748 AATGTTTCAGGTCGTCCGACAGGTCAATTTCTTCGGCTGTCCAAAAGCTGGCTTCCGATT 3689 Query 14195 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 |||||||||| |||| || | ||| |||||||| | |||||| Sbjct 3688 TTTTATACATCTCCCAAATAGCAGGGTATTTTATAGGAAGTATTACAAA 3640 >seq58313 Length=1260 Score = 91.5 bits (100), Expect = 1e-13 Identities = 298/453 (66%), Gaps = 14/453 (3%) Strand=Plus/Minus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 || ||||| ||||||| || || | || | ||| ||||||||||| ||||| || | Sbjct 630 ATTACGCCGCTTTTTTGGTAATCGCCCACGCGTTTCTCAAAAAAGTTGGTTTTGCCCTGT 571 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCT 13476 || ||||| | ||||||||||| || ||||||| || | ||||| | | || Sbjct 570 AGCGATATCATCTCCATAAAATCAAACGGATTTGATGCACCGTATACTTTCGGATAGCCC 511 Query 13477 AGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13536 ||||| | |||| || || | |||||||||||| ||| ||| | | ||| Sbjct 510 AGTTCGCCCAGCCATCTGTCGGCTACAAACTCAATATACTGACTCATCAGTTTGGCGTTC 451 Query 13537 ATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCC 13596 |||||||||| ||| || | | | | |||||| |||||||| | | || Sbjct 450 ATACCTATTAACGATACCGGCAGCGCGTCGCTGATAAATTCCTTTTCTAT---CTCTACC 394 Query 13597 TCGTTTATAATAATCTTAATAATGTCATTAG-AAGGAGGATATTTT--AG-ATGTTTAAA 13652 ||| | ||||||| || | | | | || || | |||| || ||| | | Sbjct 393 GCGTCTTTAATAATTTTGGTGACCGCCTCAGTGCTCAGCTTGTTTTCCAGCATG-CTGTA 335 Query 13653 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAA 13710 | | || ||||| || || || || ||||| | || || ||||| |||| Sbjct 334 CAGCAGGCAGGCAAATTCGCAGTGCGAACCTTCATCGCGCGATATCAGCTCGTTACTGAA 275 Query 13711 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCC 13769 | || | |||||||||||||| |||||||| | ||| || || | ||| ||| || Sbjct 274 A--GTCAGCCCTGGCATCAATCCGCGTTTTTTCAGCCAGAAGATAG-AGCAGAAACTACC 218 Query 13770 GGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 |||||||| || || ||||| |||||||| || Sbjct 217 CGAAAAGAAGATGCCTTCAACCGCAGCAAATGC 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477923555585640