Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq107681 181 1e-40 seq18333 116 5e-21 >seq107681 Length=5071 Score = 181 bits (200), Expect = 1e-40 Identities = 575/879 (65%), Gaps = 13/879 (1%) Strand=Plus/Minus Query 41772 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATAT 41831 |||||||||| || || || | |||||| || ||||| || || |||| | ||||| Sbjct 4510 TTTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCCTTGTAGGGATATCA 4451 Query 41832 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 41891 | ||||| ||||||||||| || | | || | ||| | | |||| ||| | Sbjct 4450 TCTCCATAAAATCAAACGGGTTAGATGCGCCGTACACTTTAGGATAACCCAGTTCGCCTA 4391 Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 | | | || || | || || || ||| |||||| || | ||||| ||||| | Sbjct 4390 ACCAACGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAGCGTTCATCCCTATTA 4331 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 || || | || | |||| |||||||| |||||| |||||||| || |||| Sbjct 4330 ACGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAATCTCTACCGCGTCGGTAATAA 4271 Query 42012 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTAAACATCAAACATGCG 42070 | | |||| |||| ||| || || | | || || | || || || Sbjct 4270 TTTTGGTAACTGCTTCTGTGCTCAGTTTATTCTCCAGCATACCGTAA-AGCAGGCAGGCA 4212 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 || |||||||| ||| ||||| | || | |||||| ||| || | ||||||| Sbjct 4211 AATTCGCAGTGTGAACCTTCATCGCGCGATATCAGTTCGTTACTAAAGGTCAATCCGGGC 4152 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA-GAAAAGAAGATTCC 42189 || |||||||| ||||| | ||| || ||||| || | | ||| |||||||| || || Sbjct 4151 ATCAGGCCACGTTTTTTTAACCAGAAGATAGAA-CAGAAGCTCCCTGAAAAGAAAATGCC 4093 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 42249 ||| || |||||||| || | | | ||| || | | | ||| || ||||| Sbjct 4092 TTCAACAGCCGCAAATGCTACCAAACGCTCGGCAAAGGTGCCGTTGT--TG-ATCCAGCG 4036 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 | ||||| || |||||||||| ||||| || ||||| || | || | || | | Sbjct 4035 CAGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCGCGTGGAACAAACG 3976 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 | ||||||| ||||||| || ||||| |||| || || | ||||| || Sbjct 3975 ATCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTAGGTCTCTGAGTG 3916 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||| || || |||||||| ||||| || || | ||| |||| | || || || Sbjct 3915 GATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGGTAATTGCACCTC 3856 Query 42430 TGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAAC 42487 | || ||||| || | ||||||||||| || || || ||||| |||||||| Sbjct 3855 GCTCATGAA--GTTCACAGCAAGGTTTTCGTTCACAATACCATCGCTGGCGGCAAAAAAA 3798 Query 42488 GCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CCAATCATTGAT 42546 |||| | || || |||| ||| ||| |||| ||| || || ||||| || | Sbjct 3797 GCCAGGATGTGCGAAATGAAATGTTTCTCGCCCGG-GTTCATGGCTTCCCAATGTTTCAG 3739 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 || | || | || | |||||| | |||||||| ||||| | ||||||||||| Sbjct 3738 GTCGTCCGACAGGTCAATTTCTTCGGCTGTCCAAAAGCTGGCTTCCGATTTTTTATACAT 3679 Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 | ||| ||| || | |||| || || | || ||||| Sbjct 3678 CTCCCAAATAGCAGGGTATTTTATAGGAAGTATTACAAA 3640 >seq18333 Length=334 Score = 116 bits (128), Expect = 5e-21 Identities = 177/252 (70%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 || ||| || || || || ||| ||| ||| ||| | |||| ||||||||||| || Sbjct 292 TAAACCAATACCGCCGGCGCTTTGAGAAATTTTAGCGGTTTGTTTCAACGTATCATATAT 233 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 || || ||||| |||||| ||||| | | || |||||| |||||||| | | Sbjct 232 ACCATCAATACTGTCATCCTTCATGGTTAATAAAAAACATGATGACATTTGTGGCTTAGG 173 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 || || |||||||| |||||||| | |||||||||||||| || || || | Sbjct 172 GGTGCCTGCATTAAACAAGGTAGGGGTTGCGTGCGTAAACCAACGCTCGCTCATCAGGTG 113 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| || | || || ||| |||||| || ||| || || |||| |||||||| || Sbjct 112 GTAGGTTTTGATGGCGCTTTCAATATCCGCTTTATGGATCCCAACCGATACACGCATAAA 53 Query 72537 CATATGCTGAGG 72548 || |||||| || Sbjct 52 CAAATGCTGCGG 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670206308122760