Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq58313 123 3e-23 seq107681 114 1e-20 >seq58313 Length=1260 Score = 123 bits (136), Expect = 3e-23 Identities = 352/535 (66%), Gaps = 11/535 (2%) Strand=Plus/Plus Query 50327 TCAACGCTTTCGATAATATTTCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50386 || ||||| |||| | || | ||||||| || || | ||| ||||| || |||| Sbjct 93 TCCACGCTATCGACACCATACCATGTGTGCAGAAGAAAGCCGAATGGGCGCTGCGCTGGA 152 Query 50387 CTaaaaacaaaaaaCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTG 50446 || ||| || ||||| |||| ||||| ||||| ||||| |||||||| Sbjct 153 TCAACAACGGCAA-----CTTTG-CCGAGCGTTTGGTGGCATTTGCTGCGGTTGAAGGCA 206 Query 50447 TGtttttttCCGGTAGCTT-TGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCC 50505 | || ||||| ||||| || ||| | || || | | |||| || | ||||| Sbjct 207 TCTTCTTTTCGGGTAGTTTCTGCT-CTATCTTCTGGCTGAAAAAACGCGGATTGATGCCA 265 Query 50506 GGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCG 50565 || || || || || |||||| |||| |||||||| ||||| |||| || ||||| Sbjct 266 GGGCTGACTTTCAGTAACGAGCTGATATCGCGCGATGAAGGTTCGCACTGCGAATTTGCC 325 Query 50566 TGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTGGACATG 50625 || || |||| | || | ||| || | | || || | | | || Sbjct 326 TGCCTGCTGTACAGCATGCTGGAAAAC--AAGCTGAGCACT-GAGGCGGTCACCAAAATT 382 Query 50626 TTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTG 50685 | ||||| || || || || ||||| || ||| ||| ||||| | || || | || Sbjct 383 ATTAAAGACGCGGTAGAGATAGAAAAGGAATTTATCAGCGACGCGCTGCCGGTATCGTTA 442 Query 50686 TTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTG 50745 | || |||||||| | ||||| | |||| ||||||||||| || ||||||| | || Sbjct 443 ATAGGTATGAACGCCAAACTGATGAGTCAGTATATTGAGTTTGTAGCCGACAGATGGCTG 502 Query 50746 TTGCAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAAC 50805 | ||||| | |||||| || |||| || || ||| |||||| | | Sbjct 503 GGCGAACTGGGCTATCCGAAAGTATACGGTGCATCAAATCCGTTTGATTTTATGGAGATG 562 Query 50806 ATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATACAAAA 50860 |||||| | |||||||||| |||||||| || | ||| || ||||| ||| ||| Sbjct 563 ATATCGCTACAGGGCAAAACCAACTTTTTTGAGAAACGCGTGGGCGATTACCAAA 617 >seq107681 Length=5071 Score = 114 bits (126), Expect = 1e-20 Identities = 307/463 (66%), Gaps = 15/463 (3%) Strand=Plus/Plus Query 50404 ACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGC 50463 || || ||||| ||||| || || ||||| |||||||| | || ||||| || ||| Sbjct 4054 ACCTTTGCCGAGCGTTTGGTAGCATTTGCGGCTGTTGAAGGCATTTTCTTTTCAGGGAGC 4113 Query 50464 TTTGCAGCCATATT----TTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAG 50519 || | || || ||| | ||||| | ||| | |||||||| | || ||||| Sbjct 4114 TTCTGTTCTATCTTCTGGTTAAA--AAAACGT--GGCCTGATGCCCGGATTGACCTTTAG 4169 Query 50520 CAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAG--ACTTTGCGTGTTTGTACTAC 50577 ||||| |||| |||||||| ||||| | ||||| | | ||||| || || ||| Sbjct 4170 TAACGAACTGATATCGCGCGATGAAGG--TTCACACTGCGAATTTGCCTGCCTGCTTTAC 4227 Query 50578 AATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTGGACATGTTCAAAGAAGCC 50637 || || | ||| ||| | | || | ||| || || | || | | || || Sbjct 4228 GGTATGCTGGAGAAT--AAACTGAGCACA-GAAGCAGTTACCAAAATTATTACCGACGCG 4284 Query 50638 GTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAAC 50697 || || || |||||||| ||| | || ||||| || || || | || | || |||||| Sbjct 4285 GTAGAGATTGAAAAAGAATTTATTACCGACGCATTGCCGGTATCGTTAATAGGGATGAAC 4344 Query 50698 GCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGA 50757 || | ||||| || | |||||||||||||| || ||| | | ||| | ||||| Sbjct 4345 GCTAAATTGATGAGCCAATACATTGAGTTTGTGGCTGACCGTTGGTTAGGCGAACTGGGT 4404 Query 50758 CAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAG 50817 | || ||| || ||| |||||| ||| |||||| | | ||||| | | Sbjct 4405 TATCCTAAAGTGTACGGCGCATCTAACCCGTTTGATTTTATGGAGATGATATCCCTACAA 4464 Query 50818 GGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATACAAAA 50860 |||||||| || || || |||| | | ||||| || ||| ||| Sbjct 4465 GGCAAAACCAATTTCTTTGAAAAAAGGGTAGGAGATTACCAAA 4507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506309643646320