Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq109776 188 1e-42 seq58313 149 9e-31 >seq109776 Length=48066 Score = 188 bits (208), Expect = 1e-42 Identities = 356/511 (70%), Gaps = 16/511 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| | ||||| |||||||| | || ||| | || || Sbjct 4462 ATATGGCAAATGTACAAGAAGGCCGAAGCCTCATTTTGGACTGCAGAGGAGATGGACCTC 4403 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| | | || ||| ||| || | | || | ||||| | || || || Sbjct 4402 TCAAAGGATTTACATGACTGGAAGAACCGCCTCAACGACAACGAGCGTCATTTCATCTCT 4343 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 || | | || |||||||| | ||| ||||| ||||||||||| || || || || || Sbjct 4342 CATGTCCTCGCTTTCTTTGCAGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAG-CG 4284 Query 125198 ATTCTCTCAAGAGTTGACCATTCC--AGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||||| | ||| | ||| || ||||| ||| ||||| ||||| || |||||||| Sbjct 4283 CTTCTCGAATGAGGT--CCAAGCCGCAGAGGC-TCGCTGCTTCTACGGTTTTCAAATCAT 4227 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | ||||| || | ||||| || ||||| | |||||| || || Sbjct 4226 GATGGAGAACATTCACTCCGAGACCTACTCGCTTCTCATTGATACTTACATTAAAGACCC 4167 Query 125315 -GC--AACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTAT-ACGTAAAA 125370 || ||||| || || || || |||| |||| || | || | | | | | || Sbjct 4166 TGCTGAACGTGAATAC---CTTTTCGACGCTGTCGAGACCATTCCCTGTGTCAAGCGCAA 4110 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 || | |||||| |||| ||||| ||| | ||| |||||| || || | || Sbjct 4109 AG-CAGAATGGGCTCTTCGCTGGATTTCGGACAAGAAGACTTCGTTTGCTGAGCGCCTCA 4051 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || || || || ||||| |||||||| || ||| ||| |||||||| ||||||| Sbjct 4050 TCGCTTTTGCTGCGGTTGAGGGGATCTTCTTCTCCGGTTCTTTCGCGGCCATTTTTTGGC 3991 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 | ||||||||||| ||||||||||| |||| Sbjct 3990 TGAAGAAGCGCGGTCTCATGCCCGGCTTGAC 3960 >seq58313 Length=1260 Score = 149 bits (164), Expect = 9e-31 Identities = 406/614 (66%), Gaps = 21/614 (3%) Strand=Plus/Plus Query 125244 TTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTAC 125303 ||||| |||||||| ||||| | |||||||||| ||| || |||| |||| ||| Sbjct 2 TTCCAGATCATGATGGAGAATATCCACTCGGAAACCTACGCTTTGTTGATCGACACTTAC 61 Query 125304 ATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTAT 125362 | || ||| || ||| | | | || |||| |||||||| | || | | | Sbjct 62 GTAAAAGACCCGGC-CGAAAAGGATCGGTTGTTCCACGCTATCGACACCATACCATGTGT 120 Query 125363 ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGA 125422 | || || || |||||| | | || |||||| | ||| ||| | | ||||| Sbjct 121 GCAGAAGAAAGCCGAATGGGCGCTGCGCTGGATCAACAACGGCAACTTT------GCCGA 174 Query 125423 CAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCA 125481 | |||||||||| || || || || ||||||||||||||||||||||| ||| | | Sbjct 175 GCGTTTGGTGGCATTTGCTGCGGTTGAAGGCATCTTCTTTTCGGGTAGTTTCTGC-TCTA 233 Query 125482 TCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATAT 125541 |||| ||||| || || |||||| | ||||| || ||||| |||||||||| | |||| Sbjct 234 TCTTCTGGCTGAAAAAACGCGGATTGATGCCAGGGCTGACTTTCAGTAACGAGCTGATAT 293 Query 125542 CTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTC 125601 | || || || || ||||| || |||||| || |||| ||| || | Sbjct 294 CGCGCGATGAAGGTTCGCACTGCGAATTTGCCTGCCTGCTGTACAGCA------TG---C 344 Query 125602 CCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAG 125661 || || ||| ||| ||||| ||| ||| | | || || || ||||| Sbjct 345 TGGAAAACAAGCTGAGCACTGAGGCGGTCACCAAAATTATTAAAGACGCGGTAGAGATAG 404 Query 125662 AACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAA 125721 || | || ||| | | ||| | || ||||| | || || |||||| ||| || | Sbjct 405 AAAAGGAATTTATCAGCGACGCGCTGCCGGTATCGTTAATAGGTATGAACGCCAAACTGA 464 Query 125722 TGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG-AGTTGATTGGCCGCAAG 125780 || | |||| || |||||||| || || | ||| || | | | | ||| ||| Sbjct 465 TGAGTCAGTATATTGAGTTTGTAGCCGACAGATGGCTGGGCGAACTGGGCTATCCGAAAG 524 Query 125781 ATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACC 125840 | ||| || ||||| |||||||| ||| | ||||| ||| |||| || ||| Sbjct 525 -TATACGGTGCATCAAATCCGTTTGATTTTATGGAGATGATATCGCTACAGGGCAAAACC 583 Query 125841 AACTTTTTCGAGAA 125854 |||||||| ||||| Sbjct 584 AACTTTTTTGAGAA 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740029118448760