Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq108336 89.7 9e-13 seq108255 89.7 9e-13 seq40814 84.2 4e-11 >seq108336 Length=9354 Score = 89.7 bits (98), Expect = 9e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||||||||||||||||||| ||||||||||| | |||||||| Sbjct 5351 TGGCTCCCCGACCTGGACTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCA 5292 Query 271801 ACTGAGCTATCACGGAA 271817 |||||||||||| |||| Sbjct 5291 ACTGAGCTATCAGGGAA 5275 >seq108255 Length=12210 Score = 89.7 bits (98), Expect = 9e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||||||||||||||||||| ||||||||||| | |||||||| Sbjct 5278 TGGCTCCCCGACCTGGACTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCA 5337 Query 271801 ACTGAGCTATCACGGAA 271817 |||||||||||| |||| Sbjct 5338 ACTGAGCTATCAGGGAA 5354 >seq40814 Length=282 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 273270 ATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACC 273329 |||||||||| || || |||||| |||||||||| ||||||| ||||||||||||| Sbjct 106 ATGGTCGGAGCGGCAGGATTCGAACCTGCGACATCCTGGTCCCAAACCAGGCGCGCTACC 47 Query 273330 A-ACTGCGCTACACTCCG 273346 | |||||||||| ||||| Sbjct 46 AGACTGCGCTACGCTCCG 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895694041076240