Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_004687.1 Length=156102 Score E Sequences producing significant alignments: (Bits) Value seq111115 82.4 8e-11 seq108213 82.4 8e-11 seq40814 82.4 8e-11 >seq111115 Length=66179 Score = 82.4 bits (90), Expect = 8e-11 Identities = 164/235 (70%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 152731 TGCGCGAG-GTGGTGATCAGCGACGAGCACCCCAACCCGACGCCGATCGCCATCGTGCTC 152789 |||||||| | | || |||| ||| ||||| ||| || | |||| | ||| ||| Sbjct 40214 TGCGCGAGTGCCGCGA-CAGCACCGACCACCCGAACGCGCTGGGCATCGTCTTCGCGCTG 40156 Query 152790 GATGTCACCGGGTCCAA---CTACACCGCCGC-CGTGGCCGTGCACGCCAAGCTGCCGCA 152845 || || ||||| || | | ||| | |||| | || | ||| | | ||||| || Sbjct 40155 GACGTGACCGGCTCGATGGGCGACATC-CCGCGCATGCTGGCGCAGCGCGACCTGCCCCA 40097 Query 152846 GTTGTTCGGCCTGCTGCAGCGCAAGGGCCTGATCGAGGACCCGCAGATTCTCATCGCGGC 152905 ||| | |||||||| | |||| | ||| |||||||||||||| | ||| || ||| Sbjct 40096 GTTCATGGGCCTGCT-CGGCGCCTGCGCCG--TCGAGGACCCGCAGGTGCTCTTCATGGC 40040 Query 152906 CACCGGTGATGCCAACAGCGACCGGGTGCCGCTGCAGGTCGGCCAGTTCGAGTCC 152960 | ||||| |||| | ||| | |||||||||||| ||||||||||||||| Sbjct 40039 CGTGGGTGACGCCACCTCGGACAACGCGCCGCTGCAGGTGGGCCAGTTCGAGTCC 39985 >seq108213 Length=2622 Score = 82.4 bits (90), Expect = 8e-11 Identities = 114/155 (74%), Gaps = 5/155 (3%) Strand=Plus/Plus Query 116607 TGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGC 116666 |||| ||| |||| ||||||||| || | || || |||||||| ||||| || Sbjct 1568 TGCCGGTGGGGCC-GGGCCGTGGTTCGGGCGCCGGTTCGCTGGTGGCCTACTCGCTGCTG 1626 Query 116667 ATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAA-CCCGGA 116725 |||||| |||| ||| || ||||| | ||| ||||||||||||| |||| |||| | Sbjct 1627 ATCACCGACCTCGATCCGCTCCAGTACAATCTGCTGTTCGAGCGCTTCCTCAATCCCGAA 1686 Query 116726 C-CGCCCCGACTTCCCCGACATCGACGTCGACTTC 116759 | || ||| | |||||| ||||| |||||||| Sbjct 1687 CGCGTGTCGA--TGCCCGACTTCGACATCGACTTC 1719 >seq40814 Length=282 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 94073 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 94132 ||| | |||| |||| ||| || |||| ||||||||||||| ||||||||||||||||| Sbjct 29 CGGAGCGTAGCGCAGTCTGGTAGCGCGCCTGGTTTGGGACCAGGATGTCGCAGGTTCGAA 88 Query 94133 TCCTGTCACCCCGAC 94147 ||||| | | ||||| Sbjct 89 TCCTGCCGCTCCGAC 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498704229981520