Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq108422 127 1e-24 seq108124 93.3 3e-14 seq12373 86.0 4e-12 >seq108422 Length=3279 Score = 127 bits (140), Expect = 1e-24 Identities = 200/280 (71%), Gaps = 11/280 (4%) Strand=Plus/Minus Query 99291 GTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGT 99350 ||| ||||| |||| || |||||| || || ||| ||||| ||||| ||| | Sbjct 2111 GTCGCCCATGCCCAGCAGCGCCTCGGCACCCATCTGGTCGAGGATGGTGCGGCTGTCGAT 2052 Query 99351 GAGGGACGCTG---TGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGT 99407 ||| |||| ||| || ||||| |||| || | |||| |||||||||||| || Sbjct 2051 CTTGGA-GCTGACCTGG--AAGGACAGGCGCGTCGGGATGTTGGCCTTGATGAGGCCGGT 1995 Query 99408 CACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGC 99467 | || ||||| || ||||||||||||||||||| || || ||||||||||| ||||| Sbjct 1994 GATGACGTCCACCGACGGCCGCTGCGTCGCCAGGATCAGGTGGATGCCGGCCGCGCGCGC 1935 Query 99468 CTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTG-TAGCCACCCATCATGA 99526 |||||||| | |||| | || |||| | | |||||| | ||| ||||||| | Sbjct 1934 TTTCTGCGCCAGGCGGGCGATCAGCTCCTCGATC---TTCTTGCCAACCA-CCATCATCA 1879 Query 99527 GATCAGCGAGTTCATCCACCACTACCACGATGTAGGGGAG 99566 | || || || || || | || || |||||| |||| || Sbjct 1878 GGTCGGCCAGCTCGTCGATGACGACGACGATGAAGGGTAG 1839 >seq108124 Length=5758 Score = 93.3 bits (102), Expect = 3e-14 Identities = 111/150 (74%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 99393 CTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAAT 99452 |||||| ||||| || | ||| || || || ||||||||||||||||||| || || | Sbjct 148 CTTGATCAGGCCGGTAATCACGTCGACCGATGGCCGCTGCGTCGCCAGGATCAGGTGCAG 89 Query 99453 GCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTA 99512 ||||||||| ||||||||||| ||||| || | || |||| ||| |||||| Sbjct 88 GCCGGCCGCGCGCGCCTTCTGGGCGATACGCGCGATCAACTCCTCGACC---TTCTTGCC 32 Query 99513 GCCACCCATCATGAGATCAGCGAGTTCATC 99542 | | ||||||| || || || || || || Sbjct 31 GACCACCATCATCAGGTCGGCCAGCTCGTC 2 >seq12373 Length=2096 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 16/234 (7%) Strand=Plus/Plus Query 99688 AGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACATTTGGGGTCGATCATGATG 99747 || ||||| ||||| || | ||| || | ||||| |||||||||||||| ||| Sbjct 4 AGCAGGTGCGGGATGCCCTCGTAGACGGACATCTCGAGCATTTTGGGGTCGATCAGGATC 63 Query 99748 AGTTTGACCCGATCAGGGGTCGCCCGG-----TAGAGCAGCGAAACCAGCATTGAGTTGA 99802 || || ||| || | | ||| || |||||||| | | | | ||||| Sbjct 64 AGCCGCAC---ATC--GGCTGGATCGGATTTATACAGCAGCGACAAAATGGTCGCGTTGA 118 Query 99803 TGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCA 99862 || | ||||||||||| ||||| | ||| ||||||||||| ||||||||||| |||| Sbjct 119 TGCCGACCGACTTGCCCGAACCGGTGGTGCCGGCCACCAGCAGGTGCGGCATCTTGGCCA 178 Query 99863 GGTTCAGGGAGATGTC---CTTGCCCTCGACGTCCTTGCCCACTGCCACGGTCA 99913 ||| || |||| | |||||| ||| |||||||| | || | ||||| Sbjct 179 GGT---CGGCGATGACCGGCTTGCCGGCGATATCCTTGCCGAGCGCGATGGTCA 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354162565480986