Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq101184 127 8e-25 seq92942 80.6 1e-10 >seq101184 Length=7008 Score = 127 bits (140), Expect = 8e-25 Identities = 442/681 (65%), Gaps = 8/681 (1%) Strand=Plus/Plus Query 28187 CACGGCCTGCCCGGACTGGGCAGAGC-GCCTGAAAAAGGGGCTGTCGATTATTCCGGCCC 28245 ||| ||||||| |||||| ||| || | |||| | | ||| || || ||||| | Sbjct 4202 CACCGCCTGCCTCGACTGG-CAGCGCAGGCTGATCGACCGCGAGTCAATCATCCCGGCGC 4260 Query 28246 CGATTTATCCGGATCAGGCTGCACATGCACTGGCGATTTTTAAACAACTGCGGATTGTGG 28305 | || | ||||| ||||| | || || || || || || || ||||||| | || | Sbjct 4261 CCATCTTCCCGGAGCAGGCCGAGCAAGCGCTCGCCATCTTCAAGGAACTGCGCGTCGTCG 4320 Query 28306 A--TGCACCGGGCAGCCCGACGTTCGGGGAGTCCTGCGCACAGTGGGTGTTTGACCTGGT 28363 | ||| |||| ||||| || ||||| || | || | ||||||||||| ||| | || Sbjct 4321 ACCTGC-CCGGCAAGCCC-ACCTTCGGCGACTGCTCGGAGCAGTGGGTGTTCGACTTTGT 4378 Query 28364 GGCGGCCCTGTTTGGCTCCTACGATGCGCAGACCGGTGTTCGCCATATCAAGGAAGTTTT 28423 || ||| | || ||| ||| || || | |||| | | ||| ||| Sbjct 4379 CGCCGCCATCTTCGGCGGCTATGACGCCGAAGCCGGCAAGCAGCTCATCCGCGAATACGG 4438 Query 28424 TATCCTTATCCCGaaaaaaaaCAGCAAGTCCACGCTGGCTGCCGGGATCATGATGACGGC 28483 | || ||| || || |||| ||||||||| | || ||||| ||||| ||||||| Sbjct 4439 GCTGCTGATCAGCAAGAAGAACACCAAGTCCACCATCGCCGCCGGCGTCATGCTGACGGC 4498 Query 28484 GCTGTTACTGAACTGGCGGCAGGCGGCGGGCTACACCATTCTGGCCCCGACTGTGGAGGT 28543 |||| | ||| |||||| ||| | | || ||| || || || || ||| || Sbjct 4499 GCTGATCCTGTGCTGGCGCGAGGAAGAAGAACACCTCATCCTCGCGCCCACCAAGGAAGT 4558 Query 28544 GGCGGCTAACGCCTTTAATCCTGCGCGGGATATGGTCAGACGTGACGATGATCTGGATGA 28603 || | ||| |||| || || || | ||||| | ||| || ||| || Sbjct 4559 CGCCGACAACTCCTTCAAGCCCGCCGCCGCCATGGTGCGCGAGGACCCGGAGCTGACCGA 4618 Query 28604 CCTCTGCCAGGTGCAGACACATATCCGGACCATCACCCACAGGGTGACGGACACTACCCT 28663 || | ||| || ||| || |||||||||||||||||| | | | || | ||| Sbjct 4619 GCTGTTCCACGTCCAGGATCACATCCGGACCATCACCCACCGCCTCAACCGCAACAGCCT 4678 Query 28664 TAAGGTGGTGGCAGCCGATCCGAATACGGTGTCCGGTATCAAGTCCGTGGGGACACTGAT 28723 ||||| || || || || | | ||||| ||||| | ||||||| || || | Sbjct 4679 CAAGGTTGTCGCTGCTGACACCGACACGGTCTCCGGCAAGAAGTCCGGCAAGATCCTTGT 4738 Query 28724 TGATGAACTGTGGCTGTTTGGCAAGCAGTACAAAGCGGAAGACATGTTACGTGAAGCCAT 28783 || ||||| ||||| || ||||||| || ||| || | | |||||| |||||| | Sbjct 4739 CGACGAACTCTGGCTCTTCGGCAAGCGGTCCAACGCCGCCGCCATGTTCATCGAAGCCCT 4798 Query 28784 CGGCGGGCTTGCCTCCCGTCCGGAAGGATTTGTGGTGTACACAACCACCCAG-TCGAATG 28842 |||||| | | | ||| ||||| | || | ||| ||||||||| ||| Sbjct 4799 CGGCGGCCAGGTCAGCCGCGACGAAGGCTGGGTCATCTACCTGACCACCCAGAGCGACGA 4858 Query 28843 AGCCGCCAGCCGGGGTGTTCA 28863 |||| || ||||| || |||| Sbjct 4859 AGCC-CCCGCCGGCGTCTTCA 4878 >seq92942 Length=375 Score = 80.6 bits (88), Expect = 1e-10 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 52560 CTGAAAGAGCTGGAGCGTGAAAATCGTGAACTGCGCCGCAGTAACGATATCCTTCGCCAG 52619 ||||| | |||||||||||| || || || || || | ||||| || | ||| || Sbjct 337 CTGAAGGCGCTGGAGCGTGAGAACCGGGAGCTTCGGCAAGCCAACGAGATATTGCGCAAG 278 Query 52620 GCTTCCGCTTATTTTGCGAAGGCGGAGTTCGACCGCC 52656 ||||||||||||||||| |||||||| ||||||||| Sbjct 277 GCTTCCGCTTATTTTGCCCAGGCGGAGCTCGACCGCC 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185009769364904