Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq47099 91.5 2e-13 seq108209 87.8 2e-12 seq12838 87.8 2e-12 seq108743 86.0 7e-12 >seq47099 Length=693 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 6479 AGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGA 6538 || ||||||||||| || || || || ||||| ||||| | |||||||||||||| Sbjct 687 AGCGCTTCACCAAAGGCCACGGCCTTGGCGGCGATCACATGCATCAGCGGGCCGCCTTGC 628 Query 6539 ATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATG 6598 || ||||| | || || || | ||||||||||| || || || || || || || Sbjct 627 GAGCCGGGGAATACGGCCGAGTTGATCTTCTTGGCGATCTCGGCGTCATTCGTCAGGATC 568 Query 6599 AGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGT 6636 | |||||| || |||||||||| || || || || || Sbjct 567 ACGCCACCGCGCGGGCCGCGCAGGGTCTTGTGGGTGGT 530 >seq108209 Length=20833 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 6509 GCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAGATAGCAGAATTTACTTTC 6568 ||||| ||||| | |||||||| || || || || |||||||| || || || | ||| Sbjct 13629 GCGATGACATGCATCAGCGGGCCACCCTGGATGCCGGGGAAGATGGCCGAGTTGATCTTC 13570 Query 6569 TTGGCGATATCAGCATCGTTAGTAAGAATGAGGCCACCACGAGGGCCGCGCAAAGTTTTA 6628 |||||||| || | ||| || || |||| ||| ||||| |||||||||| | || Sbjct 13569 TTGGCGATGTCTTCCCTGTTCGTCAGGATGATGCCGCCACGCGGGCCGCGCAGGCTCTTG 13510 Query 6629 TGAGTTGTAGTAGTAACAACGTCGGC 6654 || || || | || || |||||||| Sbjct 13509 TGCGTGGTGGACGTGACGACGTCGGC 13484 >seq12838 Length=5719 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/257 (68%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 6479 AGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGA 6538 ||||| || || || || || || || ||||| ||||| | ||||||||||| || Sbjct 660 AGAGCCTCGCCGAAGGCGACGGCCTTGGCCGCGATGACATGCATGAGCGGGCCGCCCTGC 601 Query 6539 ATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATG 6598 | |||||||| | || || || | |||||| ||| ||| |||||| | || || Sbjct 600 AAGCCCGGGAATACGGCCGAGTTGATCTTCTTGCCGAGATCGGCATCGCGCGACAGGATC 541 Query 6599 AGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCACCC 6658 | ||| ||||| ||||| |||| || || || || || || || || || | || | Sbjct 540 ATGCCGCCACGTGGGCCACGCAGCGTCTTGTGCGTGGTGGTGGTCACGACAT--GCGCGT 483 Query 6659 CATTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCATATCG 6718 | | ||| || || | ||| | | | || || | || || ||||| ||||||||| Sbjct 482 GA-TCGAGCGGGTTCGGGTGCACGCCGCCTGCGACCAGACCGGCGAAATGCGCCATATCG 424 Query 6719 ACCATCAATTTGGCTCC 6735 ||||| || | ||| || Sbjct 423 ACCATGAAATAGGCGCC 407 >seq108743 Length=6213 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 67544 TTGGTGCCGATTGTCCGACTCGAACGGACCACCTGATGCTTACAAAACAACTGCTCTACC 67603 |||||||||| || | | |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 2050 TTGGTGCCGACTGCCGGTTTCGAACTGGCCACCTGATGATTACAAATCAACTGCTCTACC 1991 Query 67604 GGATGAGCTAAATCGGC 67620 ||||||||| ||||| Sbjct 1990 AAATGAGCTAAGTCGGC 1974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554591238209960